Annotation Detail for YIPF5
Basic Information Top
| Gene Symbol: | YIPF5 ( DKFZp313L2216,FinGER5,SB140,SMAP-5,SMAP5,YIP1A ) |
|---|---|
| Gene Full Name: | Yip1 domain family, member 5 |
| Band: | 5q31.3 |
| Quick Links | Entrez ID:81555; OMIM: 611483; Uniprot ID:YIPF5_HUMAN; ENSEMBL ID: ENSG00000145817; HGNC ID: 24877 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.372050
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 9 / 70761 | 127 |  |
| blastocyst | 8 / 62319 | 128 | |
| fetus | 34 / 564012 | 60 | |
| neonate | 3 / 31097 | 96 | |
| infant | 9 / 23620 | 381 |  |
| juvenile | 5 / 55556 | 89 | |
| adult | 89 / 1939121 | 45 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 4 / 94178 | 42 | |
| cervical tumor | 3 / 34366 | 87 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 4 / 114246 | 35 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 4 / 119369 | 33 | |
| germ cell tumor | 9 / 263845 | 34 | |
| glioma | 8 / 106883 | 74 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 5 / 68959 | 72 | |
| leukemia | 6 / 95842 | 62 | |
| liver tumor | 21 / 96359 | 217 | |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 3 / 71755 | 41 | |
| non-neoplasia | 9 / 97250 | 92 | |
| normal | 247 / 3360307 | 73 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 1 / 104616 | 9 |  |
| primitive neuroectodermal tumor of the CNS | 15 / 125680 | 119 | |
| prostate cancer | 5 / 102680 | 48 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 7 / 124949 | 56 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 0 / 29757 | 0 | |
| blood | 5 / 123478 | 40 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 6 / 48801 | 122 | |
| brain | 79 / 1100989 | 71 | |
| cervix | 3 / 48171 | 62 | |
| connective tissue | 11 / 149255 | 73 | |
| ear | 1 / 16212 | 61 | |
| embryonic tissue | 25 / 215722 | 115 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 15 / 211054 | 71 | |
| heart | 2 / 89626 | 22 | |
| intestine | 13 / 234472 | 55 | |
| kidney | 18 / 211777 | 84 | |
| larynx | 0 / 24145 | 0 | |
| liver | 28 / 207743 | 134 | |
| lung | 17 / 336974 | 50 | |
| lymph | 2 / 44270 | 45 | |
| lymph node | 3 / 91610 | 32 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 3 / 15768 | 190 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 18 / 214812 | 83 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 4 / 41328 | 96 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 16 / 280825 | 56 | |
| prostate | 9 / 189345 | 47 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 11 / 210574 | 52 | |
| spleen | 5 / 53952 | 92 | |
| stomach | 3 / 96619 | 31 | |
| testis | 20 / 330442 | 60 | |
| thymus | 4 / 81131 | 49 | |
| thyroid | 3 / 47473 | 63 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 4 / 52413 | 76 | |
| umbilical cord | 2 / 13680 | 146 | |
| uterus | 9 / 232878 | 38 | |
| vascular | 40 / 51780 | 772 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 221423_s_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 23.05 | |
| Adipocyte | 19.45 | |
| AdrenalCortex | 5.55 | |
| Adrenalgland | 4.1 | |
| Amygdala | 8.1 | |
| Appendix | 5.2 | |
| AtrioventricularNode | 4.2 | |
| BDCA4+_DentriticCells | 31.9 | |
| Bonemarrow | 5 | |
| BronchialEpithelialCells | 38.55 | |
| CD105+_Endothelial | 5.5 | |
| CD14+_Monocytes | 7 | |
| CD19+_BCells(neg._sel.) | 5.6 | |
| CD33+_Myeloid | 7.6 | |
| CD34+ | 7.2 | |
| CD4+_Tcells | 12 | |
| CD56+_NKCells | 18.05 | |
| CD71+_EarlyErythroid | 6.95 | |
| CD8+_Tcells | 18 | |
| CardiacMyocytes | 192.5 | |
| Caudatenucleus | 4.55 | |
| Cerebellum | 4.1 | |
| CerebellumPeduncles | 5.95 | |
| CiliaryGanglion | 4.05 | |
| CingulateCortex | 5.2 | |
| Colorectaladenocarcinoma | 9.15 | |
| DorsalRootGanglion | 4.55 | |
| FetalThyroid | 4.9 | |
| Fetalbrain | 4.8 | |
| Fetalliver | 6.2 | |
| Fetallung | 4.6 | |
| GlobusPallidus | 3.9 | |
| Heart | 6.6 | |
| Hypothalamus | 5.55 | |
| Kidney | 4.3 | |
| Leukemia_chronicMyelogenousK-562 | 6.65 | |
| Leukemia_promyelocytic-HL-60 | 4.6 | |
| Leukemialymphoblastic(MOLT-4) | 6.25 | |
| Liver | 7.2 | |
| Lung | 5.6 | |
| Lymphnode | 4.3 | |
| Lymphoma_burkitts(Daudi) | 6.3 | |
| Lymphoma_burkitts(Raji) | 7.2 | |
| MedullaOblongata | 4.7 | |
| OccipitalLobe | 4.55 | |
| OlfactoryBulb | 5.1 | |
| Ovary | 4.5 | |
| Pancreas | 4.25 | |
| PancreaticIslet | 15.9 | |
| ParietalLobe | 5.55 | |
| Pituitary | 40.25 | |
| Placenta | 8.5 | |
| Pons | 5.05 | |
| PrefrontalCortex | 6.3 | |
| Prostate | 18.6 | |
| Salivarygland | 5.05 | |
| SkeletalMuscle | 6.3 | |
| Skin | 4 | |
| SmoothMuscle | 415.45 | |
| Spinalcord | 5.3 | |
| SubthalamicNucleus | 4.7 | |
| SuperiorCervicalGanglion | 22.75 | |
| TemporalLobe | 4.65 | |
| Testis | 4.55 | |
| TestisGermCell | 10.25 | |
| TestisIntersitial | 4.4 | |
| TestisLeydigCell | 6.45 | |
| TestisSeminiferousTubule | 4.6 | |
| Thalamus | 5.25 | |
| Thymus | 5.95 | |
| Thyroid | 6.15 | |
| Tongue | 5.15 | |
| Tonsil | 5.05 | |
| Trachea | 4.85 | |
| TrigeminalGanglion | 17.5 | |
| Uterus | 4.75 | |
| UterusCorpus | 6.55 | |
| WholeBlood | 8.3 | |
| Wholebrain | 4.8 | |
| colon | 10.95 | |
| pineal_day | 11.1 | |
| pineal_night | 11.58 | |
| retina | 6.475 | |
| small_intestine | 6.15 | |
- Probe name: A_24_P328969
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7 ± 0.44 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.28 ± 0.33 | |
| Basal Part of Pons | 7.5 ± 0.3 | |
| Cerebellar Cortex | 7.73 ± 0.2 | |
| Cerebellar Nuclei | 7.88 ± 0.28 | |
| Claustrum | 7.35 ± 0.48 | |
| Epithalamus | 7.63 ± 0.38 | |
| Frontal Lobe | 7.75 ± 0.3 | |
| Globus Pallidus | 7.06 ± 0.28 | |
| Hypothalamus | 8.17 ± 0.18 | |
| Insula | 7.77 ± 0.39 | |
| Limbic Lobe | 7.27 ± 0.44 | |
| Mesencephalon | 7.54 ± 0.45 | |
| Myelencephalon | 7.47 ± 0.46 | |
| Occipital Lobe | 6.98 ± 0.44 | |
| Parietal Lobe | 7.51 ± 0.39 | |
| Pontine Tegmentum | 7.56 ± 0.4 | |
| Striatum | 6.78 ± 0.34 | |
| Subthalamus | 8.12 ± 0.4 | |
| Temporal Lobe | 7.62 ± 0.3 | |
| Thalamus | 7.53 ± 0.34 | |
| White Matter | 7.68 ± 0.18 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Yipf5 | CB | Cerebellum | 2.56 | |
| 4.33 | | |||
| Yipf5 | CTX | Cerebral cortex | 21.66 | |
| 20.12 | | |||
| Yipf5 | HIP | Hippocampal region | 23.31 | |
| 37.38 | | |||
| Yipf5 | HPF | Hippocampal formation | 23.58 | |
| 32.18 | | |||
| Yipf5 | HY | Hypothalamus | 17.67 | |
| 15.63 | | |||
| Yipf5 | LSX | Lateral septal complex | 5.55 | |
| 5.28 | | |||
| Yipf5 | MB | Midbrain | 1.63 | |
| 2.79 | | |||
| Yipf5 | MY | Medulla | 0.74 | |
| 1.5 | | |||
| Yipf5 | OLF | Olfactory bulb | 21.3 | |
| 21.62 | | |||
| Yipf5 | P | Pons | 3.41 | |
| 5.76 | | |||
| Yipf5 | PAL | Pallidum | 11.2 | |
| 10.8 | | |||
| Yipf5 | RHP | Retrohippocampal region | 25.4 | |
| 24.95 | | |||
| Yipf5 | sAMY | Striatum-like amygdalar nuclei | 23.19 | |
| 22.69 | | |||
| Yipf5 | STR | Striatum | 9.58 | |
| 8.42 | | |||
| Yipf5 | STRd | Striatum dorsal region | 4.06 | |
| 3 | | |||
| Yipf5 | STRv | Striatum ventral region | 22.94 | |
| 19.01 | | |||
| Yipf5 | TH | Thalamus | 10.79 | |
| 14.25 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00042086 | 17 | 90 | 106 | PPLLEELGINFDHIWQK | Peptide Atlas |