AutismKB 2.0

Annotation Detail for CSRNP2


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Basic Information Top
Gene Symbol:CSRNP2 ( C12orf2,C12orf22,FAM130A1,FLJ25576,TAIP-12 )
Gene Full Name: cysteine-serine-rich nuclear protein 2
Band: 12q13.12
Quick LinksEntrez ID:81566; OMIM: NA; Uniprot ID:CSRN2_HUMAN; ENSEMBL ID: ENSG00000110925; HGNC ID: 16006
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst4 / 6231964
fetus27 / 56401247
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult62 / 193912131
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor4 / 9417842
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor2 / 11424617
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor14 / 26384553
glioma4 / 10688337
head and neck tumor4 / 13630229
kidney tumor2 / 6895929
leukemia0 / 958420 
liver tumor1 / 9635910
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal128 / 336030738
ovarian tumor3 / 7668239
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer2 / 10268019
retinoblastoma2 / 4635643
skin tumor1 / 1249498
soft tissue/muscle tissue tumor8 / 12519163
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder1 / 2975733
blood0 / 1234780 
bone1 / 7165513
bone marrow0 / 488010 
brain36 / 110098932
cervix0 / 481710 
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue7 / 21572232
esophagus0 / 202090 
eye11 / 21105452
heart2 / 8962622
intestine5 / 23447221
kidney6 / 21177728
larynx1 / 2414541
liver2 / 2077439
lung15 / 33697444
lymph0 / 442700 
lymph node0 / 916100 
mammary gland4 / 15327126
mouth0 / 670520 
muscle3 / 10771527
nerve1 / 1576863
ovary3 / 10205129
pancreas4 / 21481218
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta9 / 28082532
prostate6 / 18934531
salivary gland0 / 201550 
skin1 / 2105744
spleen2 / 5395237
stomach3 / 9661931
testis37 / 330442111
thymus1 / 8113112
thyroid3 / 4747363
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus11 / 23287847
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 221260_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts8.8
Adipocyte9.15
AdrenalCortex10.35
Adrenalgland8.3
Amygdala10.5
Appendix9.9
AtrioventricularNode7.6
BDCA4+_DentriticCells7.95
Bonemarrow9.6
BronchialEpithelialCells9.1
CD105+_Endothelial8.55
CD14+_Monocytes9.5
CD19+_BCells(neg._sel.)9.1
CD33+_Myeloid11
CD34+10.75
CD4+_Tcells9.6
CD56+_NKCells9.9
CD71+_EarlyErythroid8.7
CD8+_Tcells8.95
CardiacMyocytes11.75
Caudatenucleus10.05
Cerebellum12.2
CerebellumPeduncles13.5
CiliaryGanglion7
CingulateCortex14.35
Colorectaladenocarcinoma9.4
DorsalRootGanglion7.55
FetalThyroid9.1
Fetalbrain44.3
Fetalliver7.95
Fetallung6.95
GlobusPallidus8.85
Heart11.65
Hypothalamus12.3
Kidney7.95
Leukemia_chronicMyelogenousK-5628.05
Leukemia_promyelocytic-HL-607.9
Leukemialymphoblastic(MOLT-4)9.55
Liver10.25
Lung9.85
Lymphnode8.2
Lymphoma_burkitts(Daudi)12.25
Lymphoma_burkitts(Raji)11
MedullaOblongata11.95
OccipitalLobe12.85
OlfactoryBulb7.4
Ovary6.15
Pancreas7.45
PancreaticIslet10
ParietalLobe12.35
Pituitary11.05
Placenta9.65
Pons9
PrefrontalCortex16.6
Prostate10.9
Salivarygland7.65
SkeletalMuscle11.05
Skin7.85
SmoothMuscle10.45
Spinalcord11.6
SubthalamicNucleus13.5
SuperiorCervicalGanglion12.5
TemporalLobe8.75
Testis8.6
TestisGermCell26.35
TestisIntersitial7.95
TestisLeydigCell9.75
TestisSeminiferousTubule12.2
Thalamus9.8
Thymus7.65
Thyroid11.5
Tongue9.5
Tonsil9.05
Trachea7.85
TrigeminalGanglion9.85
Uterus7.7
UterusCorpus8.6
WholeBlood9.25
Wholebrain13.85
colon8.75
pineal_day17.84
pineal_night24.96
retina11.475
small_intestine8.1
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_9555_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.54 ± 0.51
Basal Forebrain5.19 ± 0.37
Basal Part of Pons5.24 ± 0.35
Cerebellar Cortex4.94 ± 0.38
Cerebellar Nuclei4.66 ± 0.47
Claustrum5.83 ± 0.63
Epithalamus4.7 ± 0.13
Frontal Lobe5 ± 0.45
Globus Pallidus4.74 ± 0.55
Hypothalamus4.79 ± 0.65
Insula5.13 ± 0.3
Limbic Lobe5.49 ± 0.53
Mesencephalon5.08 ± 0.5
Myelencephalon5.1 ± 0.53
Occipital Lobe5.6 ± 0.54
Parietal Lobe5.22 ± 0.51
Pontine Tegmentum5.05 ± 0.55
Striatum5.27 ± 0.46
Subthalamus4.88 ± 0.32
Temporal Lobe5.09 ± 0.42
Thalamus4.9 ± 0.45
White Matter4.41 ± 0.48
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
BC035295CBCerebellum40.47
77.52
BC035295CTXCerebral cortex87.46
80.11
BC035295HIPHippocampal region67.73
78.05
BC035295HPFHippocampal formation72.58
77.23
BC035295HYHypothalamus41.67
38.94
BC035295LSXLateral septal complex34.65
29.52
BC035295MBMidbrain18.22
19.41
BC035295MYMedulla36.44
50.4
BC035295OLFOlfactory bulb87.37
85.97
BC035295PPons27.14
36.07
BC035295PALPallidum38.11
41.28
BC035295RHPRetrohippocampal region78.26
76.5
BC035295sAMYStriatum-like amygdalar nuclei65.57
61.74
BC035295STRStriatum57.74
54.18
BC035295STRdStriatum dorsal region53.49
49.68
BC035295STRvStriatum ventral region65.43
60.86
BC035295THThalamus45.85
47.64
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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