Annotation Detail for MAP1LC3B
Basic Information Top
Gene Symbol: | MAP1LC3B ( ATG8F,LC3B,MAP1A/1BLC3 ) |
---|---|
Gene Full Name: | microtubule-associated protein 1 light chain 3 beta |
Band: | 16q24.2 |
Quick Links | Entrez ID:81631; OMIM: 609604; Uniprot ID:MLP3B_HUMAN; ENSEMBL ID: ENSG00000140941; HGNC ID: 13352 |
Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.356061
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
embryoid body | 9 / 70761 | 127 | |
blastocyst | 3 / 62319 | 48 | |
fetus | 115 / 564012 | 203 | |
neonate | 7 / 31097 | 225 | |
infant | 0 / 23620 | 0 | |
juvenile | 7 / 55556 | 125 | |
adult | 344 / 1939121 | 177 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
adrenal tumor | 2 / 12794 | 156 | |
bladder carcinoma | 0 / 17475 | 0 | |
breast (mammary gland) tumor | 12 / 94178 | 127 | |
cervical tumor | 6 / 34366 | 174 | |
chondrosarcoma | 10 / 82823 | 120 | |
colorectal tumor | 10 / 114246 | 87 | |
esophageal tumor | 0 / 17290 | 0 | |
gastrointestinal tumor | 13 / 119369 | 108 | |
germ cell tumor | 102 / 263845 | 386 | |
glioma | 30 / 106883 | 280 | |
head and neck tumor | 15 / 136302 | 110 | |
kidney tumor | 19 / 68959 | 275 | |
leukemia | 5 / 95842 | 52 | |
liver tumor | 8 / 96359 | 83 | |
lung tumor | 4 / 103127 | 38 | |
lymphoma | 2 / 71755 | 27 | |
non-neoplasia | 14 / 97250 | 143 | |
normal | 769 / 3360307 | 228 | |
ovarian tumor | 5 / 76682 | 65 | |
pancreatic tumor | 26 / 104616 | 248 | |
primitive neuroectodermal tumor of the CNS | 8 / 125680 | 63 | |
prostate cancer | 9 / 102680 | 87 | |
retinoblastoma | 7 / 46356 | 151 | |
skin tumor | 7 / 124949 | 56 | |
soft tissue/muscle tissue tumor | 9 / 125191 | 71 | |
uterine tumor | 7 / 90257 | 77 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
adipose tissue | 4 / 13106 | 305 | |
adrenal gland | 5 / 33197 | 150 | |
ascites | 8 / 40015 | 199 | |
bladder | 6 / 29757 | 201 | |
blood | 14 / 123478 | 113 | |
bone | 11 / 71655 | 153 | |
bone marrow | 10 / 48801 | 204 | |
brain | 324 / 1100989 | 294 | |
cervix | 6 / 48171 | 124 | |
connective tissue | 21 / 149255 | 140 | |
ear | 1 / 16212 | 61 | |
embryonic tissue | 23 / 215722 | 106 | |
esophagus | 0 / 20209 | 0 | |
eye | 36 / 211054 | 170 | |
heart | 39 / 89626 | 435 | |
intestine | 33 / 234472 | 140 | |
kidney | 47 / 211777 | 221 | |
larynx | 1 / 24145 | 41 | |
liver | 12 / 207743 | 57 | |
lung | 45 / 336974 | 133 | |
lymph | 1 / 44270 | 22 | |
lymph node | 5 / 91610 | 54 | |
mammary gland | 16 / 153271 | 104 | |
mouth | 8 / 67052 | 119 | |
muscle | 3 / 107715 | 27 | |
nerve | 2 / 15768 | 126 | |
ovary | 6 / 102051 | 58 | |
pancreas | 36 / 214812 | 167 | |
parathyroid | 11 / 20539 | 535 | |
pharynx | 2 / 41328 | 48 | |
pituitary gland | 1 / 16585 | 60 | |
placenta | 82 / 280825 | 291 | |
prostate | 23 / 189345 | 121 | |
salivary gland | 1 / 20155 | 49 | |
skin | 47 / 210574 | 223 | |
spleen | 13 / 53952 | 240 | |
stomach | 10 / 96619 | 103 | |
testis | 76 / 330442 | 229 | |
thymus | 28 / 81131 | 345 | |
thyroid | 9 / 47473 | 189 | |
tonsil | 0 / 16999 | 0 | |
trachea | 6 / 52413 | 114 | |
umbilical cord | 1 / 13680 | 73 | |
uterus | 42 / 232878 | 180 | |
vascular | 29 / 51780 | 560 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 208786_s_at
Cell line | Expression level | Expression bar |
---|---|---|
721_B_lymphoblasts | 252.8 | |
Adipocyte | 387.75 | |
AdrenalCortex | 276.65 | |
Adrenalgland | 268.1 | |
Amygdala | 986.6 | |
Appendix | 191.5 | |
AtrioventricularNode | 72.4 | |
BDCA4+_DentriticCells | 498.05 | |
Bonemarrow | 272.6 | |
BronchialEpithelialCells | 582.45 | |
CD105+_Endothelial | 161.1 | |
CD14+_Monocytes | 366.6 | |
CD19+_BCells(neg._sel.) | 524.85 | |
CD33+_Myeloid | 476.95 | |
CD34+ | 251.75 | |
CD4+_Tcells | 228.85 | |
CD56+_NKCells | 543.8 | |
CD71+_EarlyErythroid | 356.4 | |
CD8+_Tcells | 229.9 | |
CardiacMyocytes | 570.8 | |
Caudatenucleus | 414 | |
Cerebellum | 926.2 | |
CerebellumPeduncles | 1038.3 | |
CiliaryGanglion | 168.7 | |
CingulateCortex | 402 | |
Colorectaladenocarcinoma | 245.05 | |
DorsalRootGanglion | 262.7 | |
FetalThyroid | 239.85 | |
Fetalbrain | 448.7 | |
Fetalliver | 105.35 | |
Fetallung | 239.5 | |
GlobusPallidus | 349 | |
Heart | 177.65 | |
Hypothalamus | 784.3 | |
Kidney | 142.15 | |
Leukemia_chronicMyelogenousK-562 | 550.65 | |
Leukemia_promyelocytic-HL-60 | 98.7 | |
Leukemialymphoblastic(MOLT-4) | 151.9 | |
Liver | 109.2 | |
Lung | 336.05 | |
Lymphnode | 254.8 | |
Lymphoma_burkitts(Daudi) | 319.95 | |
Lymphoma_burkitts(Raji) | 160.25 | |
MedullaOblongata | 626.05 | |
OccipitalLobe | 863.6 | |
OlfactoryBulb | 283.3 | |
Ovary | 132.95 | |
Pancreas | 122.2 | |
PancreaticIslet | 364.15 | |
ParietalLobe | 701.3 | |
Pituitary | 336.3 | |
Placenta | 845.85 | |
Pons | 354.9 | |
PrefrontalCortex | 1004.75 | |
Prostate | 264 | |
Salivarygland | 235.8 | |
SkeletalMuscle | 226.95 | |
Skin | 86.25 | |
SmoothMuscle | 921 | |
Spinalcord | 813.05 | |
SubthalamicNucleus | 496.45 | |
SuperiorCervicalGanglion | 122.2 | |
TemporalLobe | 468 | |
Testis | 401.2 | |
TestisGermCell | 305.35 | |
TestisIntersitial | 362.7 | |
TestisLeydigCell | 321.85 | |
TestisSeminiferousTubule | 252.85 | |
Thalamus | 734 | |
Thymus | 241.95 | |
Thyroid | 496.65 | |
Tongue | 187.6 | |
Tonsil | 195.05 | |
Trachea | 200.45 | |
TrigeminalGanglion | 103 | |
Uterus | 279.9 | |
UterusCorpus | 310.25 | |
WholeBlood | 656.95 | |
Wholebrain | 936.25 | |
colon | 215.1 | |
pineal_day | 951.46 | |
pineal_night | 1027.24 | |
retina | 740.1 | |
small_intestine | 145.95 |
Human Whole Brain Microarrayview in Allen Brain Atlas
- Probe name: A_23_P77630
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue | Expression(mean ± stddev) | Expression Bar |
---|---|---|
Amygdala | 9.29 ± 0.34 | |
Basal Forebrain | 9.58 ± 0.46 | |
Basal Part of Pons | 9.65 ± 0.3 | |
Cerebellar Cortex | 9.44 ± 0.34 | |
Cerebellar Nuclei | 9.8 ± 0.3 | |
Claustrum | 9.64 ± 0.27 | |
Epithalamus | 9.04 ± 0.38 | |
Frontal Lobe | 9.4 ± 0.38 | |
Globus Pallidus | 9.88 ± 0.21 | |
Hypothalamus | 9.55 ± 0.36 | |
Insula | 9.2 ± 0.33 | |
Limbic Lobe | 9.5 ± 0.42 | |
Mesencephalon | 9.66 ± 0.4 | |
Myelencephalon | 9.46 ± 0.34 | |
Occipital Lobe | 9.79 ± 0.24 | |
Parietal Lobe | 9.63 ± 0.32 | |
Pontine Tegmentum | 9.5 ± 0.36 | |
Striatum | 9.11 ± 0.34 | |
Subthalamus | 9.76 ± 0.19 | |
Temporal Lobe | 9.39 ± 0.29 | |
Thalamus | 9.58 ± 0.27 | |
White Matter | 9.78 ± 0.41 |
Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
---|---|---|---|---|
Map1lc3b | CB | Cerebellum | 91.8 | |
100 | ||||
Map1lc3b | CTX | Cerebral cortex | 100 | |
100 | ||||
Map1lc3b | HIP | Hippocampal region | 100 | |
100 | ||||
Map1lc3b | HPF | Hippocampal formation | 100 | |
100 | ||||
Map1lc3b | HY | Hypothalamus | 59.74 | |
68.07 | ||||
Map1lc3b | LSX | Lateral septal complex | 57.08 | |
53.92 | ||||
Map1lc3b | MB | Midbrain | 100 | |
100 | ||||
Map1lc3b | MY | Medulla | 100 | |
100 | ||||
Map1lc3b | OLF | Olfactory bulb | 83.91 | |
100 | ||||
Map1lc3b | P | Pons | 95.08 | |
100 | ||||
Map1lc3b | PAL | Pallidum | 74.82 | |
100 | ||||
Map1lc3b | RHP | Retrohippocampal region | 100 | |
100 | ||||
Map1lc3b | sAMY | Striatum-like amygdalar nuclei | 69.09 | |
65.93 | ||||
Map1lc3b | STR | Striatum | 86.1 | |
84.53 | ||||
Map1lc3b | STRd | Striatum dorsal region | 94.82 | |
94.71 | ||||
Map1lc3b | STRv | Striatum ventral region | 79.79 | |
74.37 | ||||
Map1lc3b | TH | Thalamus | 100 | |
100 |
Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
---|---|---|---|---|---|
MLP3B_HUMAN_1 | 9 | 1 | 9 | PSEKTFKQR | PRIDE |
MLP3B_HUMAN_2 | 9 | 2 | 10 | PSEKTFKQR | PRIDE |
MLP3B_HUMAN_51 | 14 | 51 | 64 | FLVPDHVNMSELIK | PRIDE |