AutismKB 2.0

Annotation Detail for NRIP1


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Basic Information Top
Gene Symbol:NRIP1 ( FLJ77253,RIP140 )
Gene Full Name: nuclear receptor interacting protein 1
Band: 21q11.2-q21.1
Quick LinksEntrez ID:8204; OMIM: 602490; Uniprot ID:NRIP1_HUMAN; ENSEMBL ID: ENSG00000180530; HGNC ID: 8001
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body4 / 7076156
blastocyst3 / 6231948
fetus19 / 56401233
neonate1 / 3109732
infant0 / 236200 
juvenile4 / 5555671
adult79 / 193912140
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma1 / 1747557
breast (mammary gland) tumor2 / 9417821
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor5 / 11424643
esophageal tumor1 / 1729057
gastrointestinal tumor2 / 11936916
germ cell tumor15 / 26384556
glioma1 / 1068839
head and neck tumor4 / 13630229
kidney tumor4 / 6895958
leukemia1 / 9584210
liver tumor6 / 9635962
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia4 / 9725041
normal123 / 336030736
ovarian tumor4 / 7668252
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer2 / 10268019
retinoblastoma3 / 4635664
skin tumor1 / 1249498
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor8 / 9025788
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood1 / 1234788
bone2 / 7165527
bone marrow2 / 4880140
brain12 / 110098910
cervix0 / 481710 
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue9 / 21572241
esophagus1 / 2020949
eye9 / 21105442
heart0 / 896260 
intestine10 / 23447242
kidney20 / 21177794
larynx0 / 241450 
liver12 / 20774357
lung11 / 33697432
lymph0 / 442700 
lymph node9 / 9161098
mammary gland15 / 15327197
mouth1 / 6705214
muscle3 / 10771527
nerve1 / 1576863
ovary4 / 10205139
pancreas12 / 21481255
parathyroid4 / 20539194
pharynx2 / 4132848
pituitary gland0 / 165850 
placenta5 / 28082517
prostate6 / 18934531
salivary gland0 / 201550 
skin2 / 2105749
spleen1 / 5395218
stomach2 / 9661920
testis8 / 33044224
thymus3 / 8113136
thyroid2 / 4747342
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord1 / 1368073
uterus11 / 23287847
vascular11 / 51780212
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 202600_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts10.75
Adipocyte10.95
AdrenalCortex14.1
Adrenalgland11.25
Amygdala12.15
Appendix14.4
AtrioventricularNode10.1
BDCA4+_DentriticCells28.65
Bonemarrow11.1
BronchialEpithelialCells19.05
CD105+_Endothelial20.4
CD14+_Monocytes67.95
CD19+_BCells(neg._sel.)60.85
CD33+_Myeloid143.85
CD34+329.2
CD4+_Tcells38.2
CD56+_NKCells31.6
CD71+_EarlyErythroid9.35
CD8+_Tcells28.2
CardiacMyocytes16.5
Caudatenucleus9.4
Cerebellum9.7
CerebellumPeduncles13.3
CiliaryGanglion10.25
CingulateCortex12.45
Colorectaladenocarcinoma9.6
DorsalRootGanglion12.35
FetalThyroid11.7
Fetalbrain19.3
Fetalliver10.55
Fetallung7.3
GlobusPallidus9
Heart16.15
Hypothalamus8.9
Kidney8.8
Leukemia_chronicMyelogenousK-5629.35
Leukemia_promyelocytic-HL-608.15
Leukemialymphoblastic(MOLT-4)7.8
Liver14.25
Lung11.9
Lymphnode8.75
Lymphoma_burkitts(Daudi)12.6
Lymphoma_burkitts(Raji)15.2
MedullaOblongata12.4
OccipitalLobe12.05
OlfactoryBulb8.3
Ovary8.4
Pancreas9.95
PancreaticIslet11.5
ParietalLobe13.2
Pituitary14.05
Placenta11.1
Pons14.1
PrefrontalCortex99.4
Prostate73.15
Salivarygland8.8
SkeletalMuscle19.65
Skin12.8
SmoothMuscle40.1
Spinalcord10.15
SubthalamicNucleus12.1
SuperiorCervicalGanglion25.25
TemporalLobe14.5
Testis8.25
TestisGermCell8.8
TestisIntersitial9.95
TestisLeydigCell10.9
TestisSeminiferousTubule9.75
Thalamus9.9
Thymus8.8
Thyroid12.9
Tongue14.55
Tonsil10.45
Trachea9.55
TrigeminalGanglion13.5
Uterus96.75
UterusCorpus10.65
WholeBlood15.75
Wholebrain9.9
colon63.95
pineal_day110.74
pineal_night134.52
retina11.825
small_intestine71.6
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_9779_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.3 ± 0.28
Basal Forebrain8.23 ± 0.09
Basal Part of Pons7.89 ± 0.28
Cerebellar Cortex8.35 ± 0.24
Cerebellar Nuclei8.05 ± 0.12
Claustrum8.01 ± 0.22
Epithalamus7.93 ± 0.41
Frontal Lobe8.02 ± 0.33
Globus Pallidus7.79 ± 0.25
Hypothalamus7.83 ± 0.33
Insula8.05 ± 0.28
Limbic Lobe8.18 ± 0.49
Mesencephalon7.96 ± 0.27
Myelencephalon8.07 ± 0.33
Occipital Lobe8.36 ± 0.37
Parietal Lobe8.12 ± 0.33
Pontine Tegmentum8.04 ± 0.33
Striatum7.77 ± 0.3
Subthalamus7.74 ± 0.02
Temporal Lobe7.98 ± 0.34
Thalamus8.04 ± 0.25
White Matter8.03 ± 0.47
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Nrip1CBCerebellum81.54
53.99
Nrip1CTXCerebral cortex51.45
38.91
Nrip1HIPHippocampal region74.64
69.09
Nrip1HPFHippocampal formation70.12
61.73
Nrip1HYHypothalamus11.43
7.53
Nrip1LSXLateral septal complex8.48
4.68
Nrip1MBMidbrain20.52
14.29
Nrip1MYMedulla19.32
15.05
Nrip1OLFOlfactory bulb66.51
46.65
Nrip1PPons15.33
12.51
Nrip1PALPallidum12.5
9.58
Nrip1RHPRetrohippocampal region61.47
50.38
Nrip1sAMYStriatum-like amygdalar nuclei19.89
12.65
Nrip1STRStriatum21.37
13.47
Nrip1STRdStriatum dorsal region22.99
14.79
Nrip1STRvStriatum ventral region19.06
11.3
Nrip1THThalamus11.45
8.02
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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