AutismKB 2.0

Annotation Detail for UBL4A


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Basic Information Top
Gene Symbol:UBL4A ( DX254E,DXS254E,G6PD,GDX,GET5,MDY2,TMA24,UBL4 )
Gene Full Name: ubiquitin-like 4A
Band: Xq28
Quick LinksEntrez ID:8266; OMIM: 312070; Uniprot ID:UBL4A_HUMAN; ENSEMBL ID: ENSG00000102178; HGNC ID: 12505
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst2 / 6231932
fetus29 / 56401251
neonate4 / 31097128
infant3 / 23620127
juvenile7 / 55556125
adult127 / 193912165
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor10 / 94178106
cervical tumor6 / 34366174
chondrosarcoma8 / 8282396
colorectal tumor11 / 11424696
esophageal tumor1 / 1729057
gastrointestinal tumor16 / 119369134
germ cell tumor23 / 26384587
glioma16 / 106883149
head and neck tumor3 / 13630222
kidney tumor0 / 689590 
leukemia8 / 9584283
liver tumor4 / 9635941
lung tumor15 / 103127145
lymphoma3 / 7175541
non-neoplasia3 / 9725030
normal162 / 336030748
ovarian tumor6 / 7668278
pancreatic tumor9 / 10461686
primitive neuroectodermal tumor of the CNS15 / 125680119
prostate cancer15 / 102680146
retinoblastoma5 / 46356107
skin tumor13 / 124949104
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland6 / 33197180
ascites11 / 40015274
bladder1 / 2975733
blood8 / 12347864
bone4 / 7165555
bone marrow2 / 4880140
brain81 / 110098973
cervix6 / 48171124
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue4 / 21572218
esophagus1 / 2020949
eye15 / 21105471
heart3 / 8962633
intestine19 / 23447281
kidney4 / 21177718
larynx0 / 241450 
liver5 / 20774324
lung29 / 33697486
lymph2 / 4427045
lymph node6 / 9161065
mammary gland10 / 15327165
mouth0 / 670520 
muscle5 / 10771546
nerve1 / 1576863
ovary7 / 10205168
pancreas9 / 21481241
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland2 / 16585120
placenta19 / 28082567
prostate22 / 189345116
salivary gland1 / 2015549
skin19 / 21057490
spleen1 / 5395218
stomach6 / 9661962
testis10 / 33044230
thymus3 / 8113136
thyroid2 / 4747342
tonsil1 / 1699958
trachea0 / 524130 
umbilical cord1 / 1368073
uterus8 / 23287834
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 221746_at
Cell line Expression level Expression bar
721_B_lymphoblasts57.7
Adipocyte17.75
AdrenalCortex17.6
Adrenalgland16.5
Amygdala24.35
Appendix19.9
AtrioventricularNode8
BDCA4+_DentriticCells52.8
Bonemarrow19.7
BronchialEpithelialCells21.9
CD105+_Endothelial65.45
CD14+_Monocytes70.7
CD19+_BCells(neg._sel.)77.05
CD33+_Myeloid71.4
CD34+82.35
CD4+_Tcells43.2
CD56+_NKCells127.6
CD71+_EarlyErythroid88
CD8+_Tcells33
CardiacMyocytes21.25
Caudatenucleus17.35
Cerebellum15.65
CerebellumPeduncles19.1
CiliaryGanglion13.9
CingulateCortex17
Colorectaladenocarcinoma56.4
DorsalRootGanglion8.05
FetalThyroid13.95
Fetalbrain19.9
Fetalliver16.3
Fetallung15.4
GlobusPallidus19.35
Heart123.25
Hypothalamus20.55
Kidney8.5
Leukemia_chronicMyelogenousK-56216.5
Leukemia_promyelocytic-HL-6025.95
Leukemialymphoblastic(MOLT-4)22
Liver50.55
Lung68.45
Lymphnode11.7
Lymphoma_burkitts(Daudi)14.25
Lymphoma_burkitts(Raji)32.7
MedullaOblongata16.25
OccipitalLobe19.6
OlfactoryBulb13.05
Ovary12
Pancreas16.15
PancreaticIslet24.25
ParietalLobe20.8
Pituitary11.45
Placenta20.65
Pons19.45
PrefrontalCortex33.8
Prostate22.4
Salivarygland15.6
SkeletalMuscle17.75
Skin13.45
SmoothMuscle18.05
Spinalcord15.8
SubthalamicNucleus17.55
SuperiorCervicalGanglion19.45
TemporalLobe17.8
Testis11.8
TestisGermCell11.65
TestisIntersitial7.7
TestisLeydigCell14.25
TestisSeminiferousTubule10.45
Thalamus20.6
Thymus17.85
Thyroid40.5
Tongue17.35
Tonsil14.05
Trachea17.1
TrigeminalGanglion22.85
Uterus16.3
UterusCorpus14.5
WholeBlood44.95
Wholebrain62.25
colon22.15
pineal_day29.7
pineal_night36.64
retina45.1
small_intestine18.35
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P335988
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.23 ± 0.29
Basal Forebrain5.92 ± 0.18
Basal Part of Pons6.17 ± 0.15
Cerebellar Cortex5.68 ± 0.28
Cerebellar Nuclei5.71 ± 0.33
Claustrum6.47 ± 0.39
Epithalamus5.62 ± 0.24
Frontal Lobe6.04 ± 0.3
Globus Pallidus5.88 ± 0.28
Hypothalamus5.61 ± 0.41
Insula5.87 ± 0.24
Limbic Lobe6.11 ± 0.27
Mesencephalon5.88 ± 0.36
Myelencephalon6.01 ± 0.34
Occipital Lobe6.02 ± 0.31
Parietal Lobe6.1 ± 0.36
Pontine Tegmentum5.93 ± 0.4
Striatum5.99 ± 0.39
Subthalamus5.7 ± 0.24
Temporal Lobe5.98 ± 0.3
Thalamus5.95 ± 0.28
White Matter5.38 ± 0.39
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00001941 16 12 27 ECSLQVPEDELVSTLK Peptide Atlas
UBL4A_HUMAN_1 11 1 11 MQLTVKALQGR PRIDE
UBL4A_HUMAN_76 10 76 85 VLLEEGEAQR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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