AutismKB 2.0

Annotation Detail for TRRAP


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Basic Information Top
Gene Symbol:TRRAP ( FLJ10671,PAF350/400,PAF400,STAF40,TR-AP,Tra1 )
Gene Full Name: transformation/transcription domain-associated protein
Band: 7q22.1
Quick LinksEntrez ID:8295; OMIM: 603015; Uniprot ID:TRRAP_HUMAN; ENSEMBL ID: ENSG00000196367; HGNC ID: 12347
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body7 / 7076198
blastocyst7 / 62319112
fetus11 / 56401219
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult96 / 193912149
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor11 / 94178116
cervical tumor1 / 3436629
chondrosarcoma6 / 8282372
colorectal tumor6 / 11424652
esophageal tumor0 / 172900 
gastrointestinal tumor5 / 11936941
germ cell tumor2 / 2638457
glioma5 / 10688346
head and neck tumor5 / 13630236
kidney tumor1 / 6895914
leukemia9 / 9584293
liver tumor17 / 96359176
lung tumor2 / 10312719
lymphoma6 / 7175583
non-neoplasia3 / 9725030
normal118 / 336030735
ovarian tumor0 / 766820 
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer3 / 10268029
retinoblastoma7 / 46356151
skin tumor3 / 12494924
soft tissue/muscle tissue tumor7 / 12519155
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland2 / 3319760
ascites0 / 400150 
bladder2 / 2975767
blood5 / 12347840
bone3 / 7165541
bone marrow1 / 4880120
brain31 / 110098928
cervix1 / 4817120
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue18 / 21572283
esophagus0 / 202090 
eye11 / 21105452
heart0 / 896260 
intestine12 / 23447251
kidney4 / 21177718
larynx4 / 24145165
liver19 / 20774391
lung12 / 33697435
lymph5 / 44270112
lymph node13 / 91610141
mammary gland15 / 15327197
mouth1 / 6705214
muscle5 / 10771546
nerve1 / 1576863
ovary0 / 1020510 
pancreas5 / 21481223
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland1 / 1658560
placenta9 / 28082532
prostate5 / 18934526
salivary gland0 / 201550 
skin6 / 21057428
spleen1 / 5395218
stomach1 / 9661910
testis5 / 33044215
thymus6 / 8113173
thyroid3 / 4747363
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus4 / 23287817
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 214908_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts11.15
Adipocyte3.5
AdrenalCortex3.7
Adrenalgland3
Amygdala3.75
Appendix3.65
AtrioventricularNode2.7
BDCA4+_DentriticCells15.3
Bonemarrow3.5
BronchialEpithelialCells3.55
CD105+_Endothelial3.6
CD14+_Monocytes3.8
CD19+_BCells(neg._sel.)3.8
CD33+_Myeloid4.6
CD34+5.45
CD4+_Tcells15.5
CD56+_NKCells4.3
CD71+_EarlyErythroid3.3
CD8+_Tcells18.5
CardiacMyocytes4.55
Caudatenucleus3.15
Cerebellum2.85
CerebellumPeduncles3.95
CiliaryGanglion2.5
CingulateCortex3.6
Colorectaladenocarcinoma14
DorsalRootGanglion2.7
FetalThyroid3.4
Fetalbrain3.6
Fetalliver3.05
Fetallung2.95
GlobusPallidus2.6
Heart4.5
Hypothalamus3.85
Kidney2.85
Leukemia_chronicMyelogenousK-5625.3
Leukemia_promyelocytic-HL-603.15
Leukemialymphoblastic(MOLT-4)14.55
Liver4.65
Lung3.95
Lymphnode3.05
Lymphoma_burkitts(Daudi)4.6
Lymphoma_burkitts(Raji)13
MedullaOblongata3.2
OccipitalLobe3.15
OlfactoryBulb2.8
Ovary2.35
Pancreas2.85
PancreaticIslet3.8
ParietalLobe3.75
Pituitary4.1
Placenta3.75
Pons3.3
PrefrontalCortex4.45
Prostate4.2
Salivarygland2.8
SkeletalMuscle4.05
Skin2.7
SmoothMuscle4.05
Spinalcord3.75
SubthalamicNucleus3.2
SuperiorCervicalGanglion4
TemporalLobe3.2
Testis3.05
TestisGermCell3.7
TestisIntersitial2.95
TestisLeydigCell3.45
TestisSeminiferousTubule3.05
Thalamus3.55
Thymus5.75
Thyroid4.85
Tongue3.45
Tonsil3.65
Trachea2.95
TrigeminalGanglion3.5
Uterus2.95
UterusCorpus3.15
WholeBlood3.9
Wholebrain3
colon3.7
pineal_day4.9
pineal_night5.46
retina4.9
small_intestine3.55
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_12409_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.28 ± 0.48
Basal Forebrain4.97 ± 0.32
Basal Part of Pons4.84 ± 0.44
Cerebellar Cortex5.39 ± 0.26
Cerebellar Nuclei4.65 ± 0.36
Claustrum5.02 ± 0.6
Epithalamus4.85 ± 0.48
Frontal Lobe4.8 ± 0.42
Globus Pallidus4.95 ± 0.45
Hypothalamus4.83 ± 0.52
Insula4.83 ± 0.47
Limbic Lobe5.09 ± 0.52
Mesencephalon5.02 ± 0.55
Myelencephalon4.94 ± 0.5
Occipital Lobe5.25 ± 0.48
Parietal Lobe5.02 ± 0.42
Pontine Tegmentum4.97 ± 0.49
Striatum5.12 ± 0.46
Subthalamus4.73 ± 0.36
Temporal Lobe4.98 ± 0.46
Thalamus4.93 ± 0.47
White Matter5.83 ± 0.74
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00009186 13 1132 1144 ACQLPLFSYIVER Peptide Atlas
TRRAP_HUMAN_1603 8 1603 1610 VLAANPNR PRIDE
TRRAP_HUMAN_3545 6 3545 3550 VLQLLR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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