AutismKB 2.0

Annotation Detail for SNN


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Basic Information Top
Gene Symbol:SNN ( - )
Gene Full Name: stannin
Band: 16p13.13
Quick LinksEntrez ID:8303; OMIM: 603032; Uniprot ID:SNN_HUMAN; ENSEMBL ID: ENSG00000184602; HGNC ID: 11149
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst3 / 6231948
fetus38 / 56401267
neonate3 / 3109796
infant0 / 236200 
juvenile1 / 5555617
adult115 / 193912159
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor6 / 11424652
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor16 / 26384560
glioma15 / 106883140
head and neck tumor5 / 13630236
kidney tumor2 / 6895929
leukemia2 / 9584220
liver tumor1 / 9635910
lung tumor5 / 10312748
lymphoma0 / 717550 
non-neoplasia4 / 9725041
normal181 / 336030753
ovarian tumor3 / 7668239
pancreatic tumor4 / 10461638
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer10 / 10268097
retinoblastoma1 / 4635621
skin tumor1 / 1249498
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland2 / 3319760
ascites0 / 400150 
bladder2 / 2975767
blood4 / 12347832
bone1 / 7165513
bone marrow2 / 4880140
brain130 / 1100989118
cervix0 / 481710 
connective tissue3 / 14925520
ear2 / 16212123
embryonic tissue7 / 21572232
esophagus0 / 202090 
eye13 / 21105461
heart3 / 8962633
intestine6 / 23447225
kidney6 / 21177728
larynx1 / 2414541
liver1 / 2077434
lung21 / 33697462
lymph0 / 442700 
lymph node1 / 9161010
mammary gland8 / 15327152
mouth1 / 6705214
muscle4 / 10771537
nerve1 / 1576863
ovary3 / 10205129
pancreas5 / 21481223
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta0 / 2808250 
prostate13 / 18934568
salivary gland3 / 20155148
skin4 / 21057418
spleen1 / 5395218
stomach3 / 9661931
testis17 / 33044251
thymus4 / 8113149
thyroid0 / 474730 
tonsil1 / 1699958
trachea0 / 524130 
umbilical cord2 / 13680146
uterus7 / 23287830
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218033_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts7.35
Adipocyte3.5
AdrenalCortex3.6
Adrenalgland2.95
Amygdala16.85
Appendix3.5
AtrioventricularNode2.6
BDCA4+_DentriticCells11.05
Bonemarrow3.5
BronchialEpithelialCells3.5
CD105+_Endothelial3.6
CD14+_Monocytes4.3
CD19+_BCells(neg._sel.)7.6
CD33+_Myeloid6.6
CD34+4.55
CD4+_Tcells3.9
CD56+_NKCells5.35
CD71+_EarlyErythroid3.3
CD8+_Tcells3.55
CardiacMyocytes4.4
Caudatenucleus6.15
Cerebellum2.9
CerebellumPeduncles4
CiliaryGanglion2.45
CingulateCortex3.6
Colorectaladenocarcinoma3.55
DorsalRootGanglion2.7
FetalThyroid3.45
Fetalbrain3.6
Fetalliver3.05
Fetallung3
GlobusPallidus2.6
Heart4.45
Hypothalamus3.95
Kidney2.8
Leukemia_chronicMyelogenousK-5623.2
Leukemia_promyelocytic-HL-603.2
Leukemialymphoblastic(MOLT-4)2.85
Liver4.6
Lung3.95
Lymphnode3.05
Lymphoma_burkitts(Daudi)4.5
Lymphoma_burkitts(Raji)4.9
MedullaOblongata3.35
OccipitalLobe3.7
OlfactoryBulb2.8
Ovary2.35
Pancreas2.8
PancreaticIslet3.8
ParietalLobe3.7
Pituitary4.15
Placenta3.7
Pons3.7
PrefrontalCortex7.75
Prostate4.2
Salivarygland2.8
SkeletalMuscle3.95
Skin2.65
SmoothMuscle4.05
Spinalcord3.8
SubthalamicNucleus3.6
SuperiorCervicalGanglion3.9
TemporalLobe8.35
Testis3.05
TestisGermCell2.95
TestisIntersitial2.95
TestisLeydigCell3.5
TestisSeminiferousTubule3.05
Thalamus3.7
Thymus2.85
Thyroid4.5
Tongue3.4
Tonsil3.45
Trachea2.95
TrigeminalGanglion3.5
Uterus2.95
UterusCorpus3.1
WholeBlood8.15
Wholebrain24.9
colon3.5
pineal_day4.52
pineal_night4.36
retina4.325
small_intestine3.4
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P152160
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.83 ± 0.43
Basal Forebrain7.51 ± 0.26
Basal Part of Pons8.54 ± 0.2
Cerebellar Cortex7.19 ± 0.29
Cerebellar Nuclei8.24 ± 0.45
Claustrum7.45 ± 0.58
Epithalamus6.8 ± 0.39
Frontal Lobe8.13 ± 0.43
Globus Pallidus9.13 ± 0.38
Hypothalamus7.18 ± 1.18
Insula7.74 ± 0.28
Limbic Lobe7.89 ± 0.43
Mesencephalon7.68 ± 0.77
Myelencephalon7.69 ± 0.59
Occipital Lobe7.23 ± 0.6
Parietal Lobe7.87 ± 0.42
Pontine Tegmentum7.71 ± 0.59
Striatum8.66 ± 0.35
Subthalamus7.94 ± 0.58
Temporal Lobe7.66 ± 0.34
Thalamus7.71 ± 0.5
White Matter6.63 ± 0.34
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
SnnCBCerebellum9.58
12.19
SnnCTXCerebral cortex36.86
29.95
SnnHIPHippocampal region24.19
47.18
SnnHPFHippocampal formation20.1
31.87
SnnHYHypothalamus5.24
4.51
SnnLSXLateral septal complex19.8
18.97
SnnMBMidbrain12.37
14.34
SnnMYMedulla20.92
29.22
SnnOLFOlfactory bulb38.5
36.17
SnnPPons19.3
26.79
SnnPALPallidum3.8
3.78
SnnRHPRetrohippocampal region13.93
13.08
SnnsAMYStriatum-like amygdalar nuclei8.54
7.75
SnnSTRStriatum14.27
11.48
SnnSTRdStriatum dorsal region16.26
12.93
SnnSTRvStriatum ventral region9.45
6.98
SnnTHThalamus8.97
8.18
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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