AutismKB 2.0

Annotation Detail for PCDH11Y


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Basic Information Top
Gene Symbol:PCDH11Y ( PCDH-PC,PCDH22,PCDHY )
Gene Full Name: protocadherin 11 Y-linked
Band: Yp11.2
Quick LinksEntrez ID:83259; OMIM: 400022; Uniprot ID:PC11Y_HUMAN; ENSEMBL ID: ENSG00000099715; HGNC ID: 15813
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus0 / 5640120 
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult3 / 19391211
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor2 / 2638457
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal3 / 33603070 
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone1 / 7165513
bone marrow0 / 488010 
brain3 / 11009892
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine0 / 2344720 
kidney0 / 2117770 
larynx0 / 241450 
liver0 / 2077430 
lung0 / 3369740 
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis1 / 3304423
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 217049_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts21.45
Adipocyte19.2
AdrenalCortex38.8
Adrenalgland19.55
Amygdala25.4
Appendix35.25
AtrioventricularNode24.75
BDCA4+_DentriticCells20.8
Bonemarrow23.95
BronchialEpithelialCells16.65
CD105+_Endothelial21.85
CD14+_Monocytes23.35
CD19+_BCells(neg._sel.)22.2
CD33+_Myeloid25.75
CD34+25.7
CD4+_Tcells23.95
CD56+_NKCells22.65
CD71+_EarlyErythroid21.15
CD8+_Tcells20.15
CardiacMyocytes36.5
Caudatenucleus19.5
Cerebellum16.65
CerebellumPeduncles36.5
CiliaryGanglion19.95
CingulateCortex27.25
Colorectaladenocarcinoma18.15
DorsalRootGanglion24.35
FetalThyroid21.7
Fetalbrain21.9
Fetalliver18.8
Fetallung16.85
GlobusPallidus20.75
Heart43.35
Hypothalamus22.35
Kidney19.35
Leukemia_chronicMyelogenousK-56217.9
Leukemia_promyelocytic-HL-6016.5
Leukemialymphoblastic(MOLT-4)15.75
Liver32.1
Lung23
Lymphnode17.6
Lymphoma_burkitts(Daudi)28
Lymphoma_burkitts(Raji)34.1
MedullaOblongata19.45
OccipitalLobe29.25
OlfactoryBulb28.9
Ovary17.2
Pancreas19.05
PancreaticIslet21.4
ParietalLobe39.3
Pituitary23.45
Placenta17.75
Pons22.8
PrefrontalCortex22.9
Prostate22.45
Salivarygland18.25
SkeletalMuscle28.5
Skin22.05
SmoothMuscle24.8
Spinalcord23.15
SubthalamicNucleus24.4
SuperiorCervicalGanglion43.05
TemporalLobe24.75
Testis16.45
TestisGermCell18.15
TestisIntersitial28.6
TestisLeydigCell28.65
TestisSeminiferousTubule19.6
Thalamus23.2
Thymus16.1
Thyroid22.9
Tongue40
Tonsil28.25
Trachea16.75
TrigeminalGanglion42.3
Uterus16.05
UterusCorpus25.95
WholeBlood21.55
Wholebrain16.15
colon19.7
pineal_day25.6
pineal_night26.06
retina26.325
small_intestine20.75
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_14965_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.93 ± 1.03
Basal Forebrain8.23 ± 0.46
Basal Part of Pons5.1 ± 0.77
Cerebellar Cortex5.28 ± 0.82
Cerebellar Nuclei5.81 ± 0.92
Claustrum8.15 ± 0.46
Epithalamus6.57 ± 1.05
Frontal Lobe6.32 ± 0.89
Globus Pallidus6.25 ± 1.38
Hypothalamus7.35 ± 1.05
Insula6.81 ± 0.51
Limbic Lobe6.69 ± 1.54
Mesencephalon7.02 ± 1.08
Myelencephalon6.7 ± 1.28
Occipital Lobe8.38 ± 1.25
Parietal Lobe6.56 ± 0.91
Pontine Tegmentum6.89 ± 1
Striatum6.51 ± 1.68
Subthalamus7.51 ± 0.74
Temporal Lobe7 ± 0.58
Thalamus5.93 ± 0.97
White Matter4.06 ± 2.33
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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