Annotation Detail for ARHGAP24
Basic Information Top
| Gene Symbol: | ARHGAP24 ( DKFZp564B1162,FILGAP,FLJ33877,RC-GAP72,RCGAP72,p73,p73RhoGAP ) |
|---|---|
| Gene Full Name: | Rho GTPase activating protein 24 |
| Band: | 4q21.23-q21.3 |
| Quick Links | Entrez ID:83478; OMIM: 610586; Uniprot ID:RHG24_HUMAN; ENSEMBL ID: ENSG00000138639; HGNC ID: 25361 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.444229
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 29 / 564012 | 51 |  |
| neonate | 4 / 31097 | 128 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 |  |
| adult | 48 / 1939121 | 24 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 6 / 94178 | 63 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 6 / 119369 | 50 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 4 / 136302 | 29 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 3 / 96359 | 31 | |
| lung tumor | 1 / 103127 | 9 |  |
| lymphoma | 5 / 71755 | 69 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 136 / 3360307 | 40 | |
| ovarian tumor | 3 / 76682 | 39 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 3 / 125680 | 23 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 7 / 125191 | 55 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 3 / 13106 | 228 |  |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 1 / 29757 | 33 | |
| blood | 4 / 123478 | 32 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 13 / 1100989 | 11 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 9 / 149255 | 60 | |
| ear | 2 / 16212 | 123 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 6 / 211054 | 28 | |
| heart | 4 / 89626 | 44 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 35 / 211777 | 165 | |
| larynx | 0 / 24145 | 0 | |
| liver | 3 / 207743 | 14 | |
| lung | 9 / 336974 | 26 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 4 / 91610 | 43 | |
| mammary gland | 6 / 153271 | 39 | |
| mouth | 4 / 67052 | 59 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 4 / 102051 | 39 | |
| pancreas | 6 / 214812 | 27 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 7 / 280825 | 24 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 9 / 210574 | 42 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 5 / 96619 | 51 | |
| testis | 4 / 330442 | 12 | |
| thymus | 4 / 81131 | 49 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 4 / 52413 | 76 | |
| umbilical cord | 3 / 13680 | 219 | |
| uterus | 3 / 232878 | 12 | |
| vascular | 18 / 51780 | 347 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 221030_s_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 4.5 | |
| Adipocyte | 3.7 | |
| AdrenalCortex | 3.9 | |
| Adrenalgland | 3.2 | |
| Amygdala | 3.95 | |
| Appendix | 4.1 | |
| AtrioventricularNode | 3.05 | |
| BDCA4+_DentriticCells | 4.1 | |
| Bonemarrow | 3.65 | |
| BronchialEpithelialCells | 3.55 | |
| CD105+_Endothelial | 3.8 | |
| CD14+_Monocytes | 4 | |
| CD19+_BCells(neg._sel.) | 3.95 | |
| CD33+_Myeloid | 4.75 | |
| CD34+ | 4.7 | |
| CD4+_Tcells | 3.9 | |
| CD56+_NKCells | 4.3 | |
| CD71+_EarlyErythroid | 3.45 | |
| CD8+_Tcells | 3.6 | |
| CardiacMyocytes | 4.7 | |
| Caudatenucleus | 3.35 | |
| Cerebellum | 3 | |
| CerebellumPeduncles | 4.35 | |
| CiliaryGanglion | 2.65 | |
| CingulateCortex | 3.85 | |
| Colorectaladenocarcinoma | 3.7 | |
| DorsalRootGanglion | 3.05 | |
| FetalThyroid | 3.65 | |
| Fetalbrain | 3.7 | |
| Fetalliver | 3.2 | |
| Fetallung | 3.05 | |
| GlobusPallidus | 2.8 | |
| Heart | 4.7 | |
| Hypothalamus | 4.1 | |
| Kidney | 3.2 | |
| Leukemia_chronicMyelogenousK-562 | 3.35 | |
| Leukemia_promyelocytic-HL-60 | 3.3 | |
| Leukemialymphoblastic(MOLT-4) | 3 | |
| Liver | 4.85 | |
| Lung | 4.1 | |
| Lymphnode | 3.25 | |
| Lymphoma_burkitts(Daudi) | 4.7 | |
| Lymphoma_burkitts(Raji) | 5.2 | |
| MedullaOblongata | 3.45 | |
| OccipitalLobe | 3.35 | |
| OlfactoryBulb | 2.95 | |
| Ovary | 2.55 | |
| Pancreas | 2.95 | |
| PancreaticIslet | 3.95 | |
| ParietalLobe | 3.9 | |
| Pituitary | 4.35 | |
| Placenta | 3.75 | |
| Pons | 3.6 | |
| PrefrontalCortex | 4.7 | |
| Prostate | 4.4 | |
| Salivarygland | 3 | |
| SkeletalMuscle | 4.45 | |
| Skin | 3.5 | |
| SmoothMuscle | 4.25 | |
| Spinalcord | 3.95 | |
| SubthalamicNucleus | 3.5 | |
| SuperiorCervicalGanglion | 5.6 | |
| TemporalLobe | 3.45 | |
| Testis | 3.2 | |
| TestisGermCell | 3.1 | |
| TestisIntersitial | 3.15 | |
| TestisLeydigCell | 3.65 | |
| TestisSeminiferousTubule | 3.2 | |
| Thalamus | 3.8 | |
| Thymus | 2.9 | |
| Thyroid | 4.7 | |
| Tongue | 3.8 | |
| Tonsil | 3.6 | |
| Trachea | 3.1 | |
| TrigeminalGanglion | 4.15 | |
| Uterus | 3.05 | |
| UterusCorpus | 3.35 | |
| WholeBlood | 4 | |
| Wholebrain | 3.15 | |
| colon | 3.7 | |
| pineal_day | 4.62 | |
| pineal_night | 4.58 | |
| retina | 4.475 | |
| small_intestine | 3.6 | |
- Probe name: A_24_P388659
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.41 ± 0.7 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.29 ± 1.07 | |
| Basal Part of Pons | 4.6 ± 0.15 | |
| Cerebellar Cortex | 2.69 ± 0.58 | |
| Cerebellar Nuclei | 4.05 ± 0.56 | |
| Claustrum | 3.22 ± 0.73 | |
| Epithalamus | 3.08 ± 1.02 | |
| Frontal Lobe | 3.24 ± 0.86 | |
| Globus Pallidus | 5.14 ± 0.56 | |
| Hypothalamus | 3.91 ± 0.51 | |
| Insula | 3.44 ± 0.78 | |
| Limbic Lobe | 3.11 ± 0.79 | |
| Mesencephalon | 3.49 ± 0.76 | |
| Myelencephalon | 3.36 ± 0.87 | |
| Occipital Lobe | 3.72 ± 0.83 | |
| Parietal Lobe | 3.46 ± 0.71 | |
| Pontine Tegmentum | 3.27 ± 0.69 | |
| Striatum | 3.62 ± 0.75 | |
| Subthalamus | 4.39 ± 0.9 | |
| Temporal Lobe | 3.17 ± 0.76 | |
| Thalamus | 3.72 ± 0.8 | |
| White Matter | 2.68 ± 0.48 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Arhgap24 | CB | Cerebellum | 1.85 | |
| 3.4 | | |||
| Arhgap24 | CTX | Cerebral cortex | 3.54 | |
| 3.03 | | |||
| Arhgap24 | HIP | Hippocampal region | 4.66 | |
| 4.74 | | |||
| Arhgap24 | HPF | Hippocampal formation | 4.97 | |
| 4.62 | | |||
| Arhgap24 | HY | Hypothalamus | 13.58 | |
| 14.06 | | |||
| Arhgap24 | LSX | Lateral septal complex | 0.08 | |
| 0.05 | | |||
| Arhgap24 | MB | Midbrain | 4.55 | |
| 6.25 | | |||
| Arhgap24 | MY | Medulla | 5.1 | |
| 9.63 | | |||
| Arhgap24 | OLF | Olfactory bulb | 15.76 | |
| 14.71 | | |||
| Arhgap24 | P | Pons | 9.87 | |
| 15.34 | | |||
| Arhgap24 | PAL | Pallidum | 12.83 | |
| 15.01 | | |||
| Arhgap24 | RHP | Retrohippocampal region | 5.33 | |
| 4.37 | | |||
| Arhgap24 | sAMY | Striatum-like amygdalar nuclei | 20.2 | |
| 16.68 | | |||
| Arhgap24 | STR | Striatum | 5 | |
| 4.66 | | |||
| Arhgap24 | STRd | Striatum dorsal region | 2.97 | |
| 3.2 | | |||
| Arhgap24 | STRv | Striatum ventral region | 4.93 | |
| 4.19 | | |||
| Arhgap24 | TH | Thalamus | 14.82 | |
| 13.81 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00043166 | 13 | 70 | 82 | VSEHPCNEENPGK | Peptide Atlas |