AutismKB 2.0

Annotation Detail for HIST1H3D


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Basic Information Top
Gene Symbol:HIST1H3D ( H3/b,H3FB )
Gene Full Name: histone cluster 1, H3d
Band: 6p22.2
Quick LinksEntrez ID:8351; OMIM: 602811; Uniprot ID:H31_HUMAN; ENSEMBL ID: ENSG00000197409; HGNC ID: 4767
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus3 / 5640125
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult7 / 19391213
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor1 / 3436629
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal15 / 33603074
ovarian tumor1 / 7668213
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites1 / 4001524
bladder0 / 297570 
blood1 / 1234788
bone0 / 716550 
bone marrow0 / 488010 
brain0 / 11009890 
cervix1 / 4817120
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine1 / 2344724
kidney0 / 2117770 
larynx0 / 241450 
liver3 / 20774314
lung2 / 3369745
lymph0 / 442700 
lymph node0 / 916100 
mammary gland2 / 15327113
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary1 / 1020519
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta2 / 2808257
prostate1 / 1893455
salivary gland0 / 201550 
skin3 / 21057414
spleen2 / 5395237
stomach1 / 9661910
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus1 / 2328784
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 214509_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.05
Adipocyte4.75
AdrenalCortex5.9
Adrenalgland4.5
Amygdala5
Appendix5
AtrioventricularNode4.6
BDCA4+_DentriticCells5.15
Bonemarrow5.2
BronchialEpithelialCells4.75
CD105+_Endothelial4.75
CD14+_Monocytes5.15
CD19+_BCells(neg._sel.)5.2
CD33+_Myeloid6.2
CD34+6.2
CD4+_Tcells5.3
CD56+_NKCells5.8
CD71+_EarlyErythroid4.8
CD8+_Tcells4.65
CardiacMyocytes10
Caudatenucleus4.45
Cerebellum4
CerebellumPeduncles6.6
CiliaryGanglion3.5
CingulateCortex5.65
Colorectaladenocarcinoma4.95
DorsalRootGanglion4.55
FetalThyroid4.8
Fetalbrain4.9
Fetalliver4.3
Fetallung4.05
GlobusPallidus3.7
Heart6.5
Hypothalamus5.3
Kidney4.4
Leukemia_chronicMyelogenousK-5624.4
Leukemia_promyelocytic-HL-604.35
Leukemialymphoblastic(MOLT-4)4
Liver6.55
Lung5.4
Lymphnode4.25
Lymphoma_burkitts(Daudi)6.3
Lymphoma_burkitts(Raji)7.8
MedullaOblongata4.45
OccipitalLobe4.4
OlfactoryBulb3.9
Ovary3.65
Pancreas5.1
PancreaticIslet5.25
ParietalLobe5.6
Pituitary5.75
Placenta5.1
Pons4.7
PrefrontalCortex6.05
Prostate5.5
Salivarygland4.1
SkeletalMuscle5.75
Skin3.85
SmoothMuscle5.55
Spinalcord5.3
SubthalamicNucleus4.6
SuperiorCervicalGanglion5.6
TemporalLobe4.55
Testis4.15
TestisGermCell4.1
TestisIntersitial4.1
TestisLeydigCell5.05
TestisSeminiferousTubule4.45
Thalamus5.15
Thymus3.9
Thyroid6.15
Tongue5.4
Tonsil4.8
Trachea4.15
TrigeminalGanglion5.25
Uterus4.05
UterusCorpus5.2
WholeBlood5.4
Wholebrain4
colon4.95
pineal_day6.2
pineal_night6.02
retina5.975
small_intestine4.8
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_524_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala9.83 ± 0.32
Basal Forebrain9.87 ± 0.22
Basal Part of Pons9.12 ± 0.28
Cerebellar Cortex9.59 ± 0.29
Cerebellar Nuclei9.76 ± 0.38
Claustrum9.52 ± 0.27
Epithalamus9.96 ± 0.3
Frontal Lobe9.51 ± 0.37
Globus Pallidus10.21 ± 0.27
Hypothalamus9.7 ± 0.56
Insula9.51 ± 0.32
Limbic Lobe9.51 ± 0.31
Mesencephalon9.63 ± 0.32
Myelencephalon9.6 ± 0.38
Occipital Lobe9.47 ± 0.34
Parietal Lobe9.49 ± 0.37
Pontine Tegmentum9.61 ± 0.26
Striatum9.87 ± 0.32
Subthalamus9.19 ± 0.34
Temporal Lobe9.47 ± 0.34
Thalamus9.5 ± 0.25
White Matter10.13 ± 0.23
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
H31_HUMAN_19 8 19 26 QLATKAAR PRIDE
H31_HUMAN_19 9 19 27 KQLATKAAR PRIDE
H31_HUMAN_41 9 41 49 YRPGTVALR PRIDE
H31_HUMAN_57 7 57 63 STELLIR PRIDE
H31_HUMAN_64 6 64 69 KLPFQR PRIDE
H31_HUMAN_73 11 73 83 EIAQDFKTDLR PRIDE
H31_HUMAN_74 11 74 84 EIAQDFKTDLR PRIDE
PAp00002372 12 105 116 FEDTNLCAIHAK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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