Annotation Detail for COG3
Basic Information Top
| Gene Symbol: | COG3 ( SEC34 ) |
|---|---|
| Gene Full Name: | component of oligomeric golgi complex 3 |
| Band: | 13q14.13 |
| Quick Links | Entrez ID:83548; OMIM: 606975; Uniprot ID:COG3_HUMAN; ENSEMBL ID: ENSG00000136152; HGNC ID: 18619 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.507948
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 3 / 62319 | 48 | |
| fetus | 32 / 564012 | 56 |  |
| neonate | 1 / 31097 | 32 | |
| infant | 4 / 23620 | 169 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 86 / 1939121 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 4 / 94178 | 42 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 5 / 114246 | 43 | |
| esophageal tumor | 3 / 17290 | 173 | |
| gastrointestinal tumor | 1 / 119369 | 8 |  |
| germ cell tumor | 7 / 263845 | 26 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 5 / 136302 | 36 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 4 / 95842 | 41 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 2 / 71755 | 27 | |
| non-neoplasia | 5 / 97250 | 51 | |
| normal | 187 / 3360307 | 55 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 3 / 104616 | 28 | |
| primitive neuroectodermal tumor of the CNS | 7 / 125680 | 55 | |
| prostate cancer | 5 / 102680 | 48 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 9 / 90257 | 99 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 3 / 123478 | 24 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 59 / 1100989 | 53 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 4 / 149255 | 26 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 8 / 215722 | 37 | |
| esophagus | 3 / 20209 | 148 | |
| eye | 5 / 211054 | 23 | |
| heart | 5 / 89626 | 55 | |
| intestine | 10 / 234472 | 42 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 1 / 24145 | 41 | |
| liver | 4 / 207743 | 19 | |
| lung | 20 / 336974 | 59 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 7 / 91610 | 76 | |
| mammary gland | 8 / 153271 | 52 | |
| mouth | 4 / 67052 | 59 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 2 / 15768 | 126 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 11 / 214812 | 51 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 13 / 280825 | 46 | |
| prostate | 12 / 189345 | 63 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 14 / 210574 | 66 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 1 / 96619 | 10 | |
| testis | 27 / 330442 | 81 | |
| thymus | 7 / 81131 | 86 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 17 / 52413 | 324 |  |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 14 / 232878 | 60 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_24_P212819
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 9.91 ± 0.8 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 9.5 ± 0.23 | |
| Basal Part of Pons | 10.03 ± 0.34 | |
| Cerebellar Cortex | 9.31 ± 0.48 | |
| Cerebellar Nuclei | 9.88 ± 0.37 | |
| Claustrum | 9.98 ± 0.45 | |
| Epithalamus | 9.45 ± 0.64 | |
| Frontal Lobe | 9.82 ± 0.55 | |
| Globus Pallidus | 10.25 ± 0.27 | |
| Hypothalamus | 9.55 ± 0.83 | |
| Insula | 9.62 ± 0.69 | |
| Limbic Lobe | 9.77 ± 0.45 | |
| Mesencephalon | 9.61 ± 0.45 | |
| Myelencephalon | 9.74 ± 0.57 | |
| Occipital Lobe | 9.53 ± 0.55 | |
| Parietal Lobe | 9.6 ± 0.52 | |
| Pontine Tegmentum | 9.59 ± 0.55 | |
| Striatum | 9.92 ± 0.62 | |
| Subthalamus | 9.52 ± 0.04 | |
| Temporal Lobe | 9.66 ± 0.57 | |
| Thalamus | 9.68 ± 0.48 | |
| White Matter | 10.21 ± 0.43 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Cog3 | CB | Cerebellum | 19.7 | |
| 19.34 | | |||
| Cog3 | CTX | Cerebral cortex | 54 | |
| 37.17 | | |||
| Cog3 | HIP | Hippocampal region | 37.86 | |
| 41.21 | | |||
| Cog3 | HPF | Hippocampal formation | 39.59 | |
| 36.98 | | |||
| Cog3 | HY | Hypothalamus | 12.99 | |
| 9.19 | | |||
| Cog3 | LSX | Lateral septal complex | 29.04 | |
| 18.13 | | |||
| Cog3 | MB | Midbrain | 15.04 | |
| 12.47 | | |||
| Cog3 | MY | Medulla | 21.39 | |
| 20.36 | | |||
| Cog3 | OLF | Olfactory bulb | 44.29 | |
| 33.56 | | |||
| Cog3 | P | Pons | 17.33 | |
| 16.15 | | |||
| Cog3 | PAL | Pallidum | 15.2 | |
| 11.6 | | |||
| Cog3 | RHP | Retrohippocampal region | 44.12 | |
| 32.13 | | |||
| Cog3 | sAMY | Striatum-like amygdalar nuclei | 13.19 | |
| 8.4 | | |||
| Cog3 | STR | Striatum | 21.19 | |
| 13.72 | | |||
| Cog3 | STRd | Striatum dorsal region | 21.07 | |
| 14.06 | | |||
| Cog3 | STRv | Striatum ventral region | 23 | |
| 13.61 | | |||
| Cog3 | TH | Thalamus | 24.72 | |
| 19.16 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| COG3_HUMAN_1 | 15 | 1 | 15 | AEAALLLLPEAAAER | PRIDE |
| COG3_HUMAN_2 | 15 | 2 | 16 | AEAALLLLPEAAAER | PRIDE |
| PAp00028094 | 28 | 169 | 196 | TGTLHEACEQLLKEQSELVDLAENIQQK | Peptide Atlas |