AutismKB 2.0

Annotation Detail for HIST1H3H


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Basic Information Top
Gene Symbol:HIST1H3H ( FLJ92264,H3/k,H3F1K,H3FK,HIST1H3A,HIST1H3B,HIST1H3C,HIST1H3D,HIST1H3E,HIST1H3F,HIST1H3G,HIST1H3I,HIST1H3J )
Gene Full Name: histone cluster 1, H3h
Band: 6p22.1
Quick LinksEntrez ID:8357; OMIM: 602818; Uniprot ID:H31_HUMAN; ENSEMBL ID: ENSG00000203813; HGNC ID: 4775
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus0 / 5640120 
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult54 / 193912127
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor42 / 114246367
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor1 / 1363027
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal14 / 33603074
ovarian tumor1 / 7668213
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood2 / 12347816
bone0 / 716550 
bone marrow0 / 488010 
brain1 / 11009890 
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine42 / 234472179
kidney0 / 2117770 
larynx0 / 241450 
liver2 / 2077439
lung1 / 3369742
lymph0 / 442700 
lymph node0 / 916100 
mammary gland2 / 15327113
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary1 / 1020519
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta8 / 28082528
prostate0 / 1893450 
salivary gland1 / 2015549
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis0 / 3304420 
thymus2 / 8113124
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 214509_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.05
Adipocyte4.75
AdrenalCortex5.9
Adrenalgland4.5
Amygdala5
Appendix5
AtrioventricularNode4.6
BDCA4+_DentriticCells5.15
Bonemarrow5.2
BronchialEpithelialCells4.75
CD105+_Endothelial4.75
CD14+_Monocytes5.15
CD19+_BCells(neg._sel.)5.2
CD33+_Myeloid6.2
CD34+6.2
CD4+_Tcells5.3
CD56+_NKCells5.8
CD71+_EarlyErythroid4.8
CD8+_Tcells4.65
CardiacMyocytes10
Caudatenucleus4.45
Cerebellum4
CerebellumPeduncles6.6
CiliaryGanglion3.5
CingulateCortex5.65
Colorectaladenocarcinoma4.95
DorsalRootGanglion4.55
FetalThyroid4.8
Fetalbrain4.9
Fetalliver4.3
Fetallung4.05
GlobusPallidus3.7
Heart6.5
Hypothalamus5.3
Kidney4.4
Leukemia_chronicMyelogenousK-5624.4
Leukemia_promyelocytic-HL-604.35
Leukemialymphoblastic(MOLT-4)4
Liver6.55
Lung5.4
Lymphnode4.25
Lymphoma_burkitts(Daudi)6.3
Lymphoma_burkitts(Raji)7.8
MedullaOblongata4.45
OccipitalLobe4.4
OlfactoryBulb3.9
Ovary3.65
Pancreas5.1
PancreaticIslet5.25
ParietalLobe5.6
Pituitary5.75
Placenta5.1
Pons4.7
PrefrontalCortex6.05
Prostate5.5
Salivarygland4.1
SkeletalMuscle5.75
Skin3.85
SmoothMuscle5.55
Spinalcord5.3
SubthalamicNucleus4.6
SuperiorCervicalGanglion5.6
TemporalLobe4.55
Testis4.15
TestisGermCell4.1
TestisIntersitial4.1
TestisLeydigCell5.05
TestisSeminiferousTubule4.45
Thalamus5.15
Thymus3.9
Thyroid6.15
Tongue5.4
Tonsil4.8
Trachea4.15
TrigeminalGanglion5.25
Uterus4.05
UterusCorpus5.2
WholeBlood5.4
Wholebrain4
colon4.95
pineal_day6.2
pineal_night6.02
retina5.975
small_intestine4.8
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P333484
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.13 ± 0.35
Basal Forebrain5.34 ± 0.55
Basal Part of Pons4.36 ± 0.31
Cerebellar Cortex5.46 ± 0.31
Cerebellar Nuclei5.19 ± 0.57
Claustrum5.19 ± 1.06
Epithalamus5.33 ± 0.62
Frontal Lobe5 ± 0.54
Globus Pallidus5.43 ± 0.42
Hypothalamus5.4 ± 0.26
Insula4.99 ± 0.33
Limbic Lobe4.81 ± 0.52
Mesencephalon5.14 ± 0.51
Myelencephalon5.02 ± 0.56
Occipital Lobe4.9 ± 0.48
Parietal Lobe5.1 ± 0.47
Pontine Tegmentum5.19 ± 0.5
Striatum4.56 ± 0.55
Subthalamus4.77 ± 0.39
Temporal Lobe4.98 ± 0.47
Thalamus4.94 ± 0.4
White Matter4.81 ± 0.28
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
H31_HUMAN_19 8 19 26 QLATKAAR PRIDE
H31_HUMAN_19 9 19 27 KQLATKAAR PRIDE
H31_HUMAN_41 9 41 49 YRPGTVALR PRIDE
H31_HUMAN_57 7 57 63 STELLIR PRIDE
H31_HUMAN_64 6 64 69 KLPFQR PRIDE
H31_HUMAN_73 11 73 83 EIAQDFKTDLR PRIDE
H31_HUMAN_74 11 74 84 EIAQDFKTDLR PRIDE
PAp00002372 12 105 116 FEDTNLCAIHAK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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