AutismKB 2.0

Annotation Detail for TRAPPC9


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:TRAPPC9 ( IBP,IKBKBBP,KIAA1882,MGC4737,MGC4769,MRT13,NIBP,TRS120 )
Gene Full Name: trafficking protein particle complex 9
Band: 8q24.3
Quick LinksEntrez ID:83696; OMIM: 611966; Uniprot ID:TPPC9_HUMAN; ENSEMBL ID: ENSG00000167632; HGNC ID: 30832
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus10 / 56401217
neonate0 / 310970 
infant0 / 236200 
juvenile2 / 5555635
adult60 / 193912130
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor2 / 3436658
chondrosarcoma4 / 8282348
colorectal tumor3 / 11424626
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor6 / 26384522
glioma3 / 10688328
head and neck tumor1 / 1363027
kidney tumor1 / 6895914
leukemia3 / 9584231
liver tumor2 / 9635920
lung tumor5 / 10312748
lymphoma2 / 7175527
non-neoplasia2 / 9725020
normal89 / 336030726
ovarian tumor6 / 7668278
pancreatic tumor11 / 104616105
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer2 / 10268019
retinoblastoma1 / 4635621
skin tumor4 / 12494932
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood3 / 12347824
bone2 / 7165527
bone marrow1 / 4880120
brain61 / 110098955
cervix2 / 4817141
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye6 / 21105428
heart0 / 896260 
intestine10 / 23447242
kidney4 / 21177718
larynx0 / 241450 
liver2 / 2077439
lung8 / 33697423
lymph1 / 4427022
lymph node1 / 9161010
mammary gland1 / 1532716
mouth1 / 6705214
muscle3 / 10771527
nerve0 / 157680 
ovary8 / 10205178
pancreas13 / 21481260
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta7 / 28082524
prostate5 / 18934526
salivary gland1 / 2015549
skin6 / 21057428
spleen0 / 539520 
stomach1 / 9661910
testis11 / 33044233
thymus6 / 8113173
thyroid0 / 474730 
tonsil0 / 169990 
trachea4 / 5241376
umbilical cord0 / 136800 
uterus9 / 23287838
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 221836_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts16
Adipocyte9.85
AdrenalCortex12.45
Adrenalgland8.4
Amygdala11.05
Appendix9.95
AtrioventricularNode7.35
BDCA4+_DentriticCells12.35
Bonemarrow9.8
BronchialEpithelialCells9.9
CD105+_Endothelial14.9
CD14+_Monocytes16.1
CD19+_BCells(neg._sel.)22.8
CD33+_Myeloid13.7
CD34+15.35
CD4+_Tcells15.2
CD56+_NKCells12.85
CD71+_EarlyErythroid13.5
CD8+_Tcells12.55
CardiacMyocytes10.8
Caudatenucleus9.15
Cerebellum8.2
CerebellumPeduncles17.3
CiliaryGanglion6.3
CingulateCortex10.9
Colorectaladenocarcinoma10.15
DorsalRootGanglion7
FetalThyroid9.6
Fetalbrain10.25
Fetalliver8.85
Fetallung8.5
GlobusPallidus7.25
Heart13.7
Hypothalamus11.5
Kidney8.2
Leukemia_chronicMyelogenousK-5629.2
Leukemia_promyelocytic-HL-608.2
Leukemialymphoblastic(MOLT-4)9.6
Liver14.55
Lung14.05
Lymphnode8.4
Lymphoma_burkitts(Daudi)12.45
Lymphoma_burkitts(Raji)14.35
MedullaOblongata8.85
OccipitalLobe8.85
OlfactoryBulb7.75
Ovary6.35
Pancreas7.65
PancreaticIslet10.8
ParietalLobe10.3
Pituitary11.65
Placenta10.45
Pons9.4
PrefrontalCortex16.6
Prostate13.6
Salivarygland7.95
SkeletalMuscle11.15
Skin7.5
SmoothMuscle7.95
Spinalcord10.45
SubthalamicNucleus12.3
SuperiorCervicalGanglion10.05
TemporalLobe8.25
Testis8.85
TestisGermCell8.8
TestisIntersitial7
TestisLeydigCell10.75
TestisSeminiferousTubule8.75
Thalamus9.8
Thymus8.2
Thyroid16.85
Tongue10
Tonsil8.85
Trachea7.45
TrigeminalGanglion9.6
Uterus10.3
UterusCorpus8.8
WholeBlood11.7
Wholebrain11.35
colon9.25
pineal_day33.18
pineal_night21.82
retina12.45
small_intestine8.75
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P73420
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.44 ± 0.46
Basal Forebrain8.5 ± 0.22
Basal Part of Pons9.24 ± 0.14
Cerebellar Cortex8.78 ± 0.25
Cerebellar Nuclei8.77 ± 0.32
Claustrum8.91 ± 0.25
Epithalamus8.44 ± 0.15
Frontal Lobe8.85 ± 0.26
Globus Pallidus8.16 ± 0.21
Hypothalamus8.8 ± 0.22
Insula8.73 ± 0.23
Limbic Lobe8.74 ± 0.38
Mesencephalon8.65 ± 0.23
Myelencephalon8.71 ± 0.34
Occipital Lobe8.35 ± 0.32
Parietal Lobe8.72 ± 0.28
Pontine Tegmentum8.58 ± 0.22
Striatum8.35 ± 0.34
Subthalamus9.04 ± 0.15
Temporal Lobe8.83 ± 0.27
Thalamus8.65 ± 0.23
White Matter8.51 ± 0.35
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
1810044A24RikCBCerebellum1.72
2.24
1810044A24RikCTXCerebral cortex8.96
7.14
1810044A24RikHIPHippocampal region13.44
16.03
1810044A24RikHPFHippocampal formation13.99
14.81
1810044A24RikHYHypothalamus3.64
3.16
1810044A24RikLSXLateral septal complex0.43
0.28
1810044A24RikMBMidbrain1.43
1.85
1810044A24RikMYMedulla0.1
0.17
1810044A24RikOLFOlfactory bulb7.55
5.93
1810044A24RikPPons0.7
1.21
1810044A24RikPALPallidum2.78
2.64
1810044A24RikRHPRetrohippocampal region15.41
13.5
1810044A24RiksAMYStriatum-like amygdalar nuclei1.97
1.43
1810044A24RikSTRStriatum2.57
2.06
1810044A24RikSTRdStriatum dorsal region2.54
2.09
1810044A24RikSTRvStriatum ventral region3.27
2.33
1810044A24RikTHThalamus6.93
6.9
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00096870 36 1092 1127 SGEASVEGLLNQLVLEHLQLAPLQWDVLVDGQPCDR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved