Annotation Detail for SETDB2
Basic Information Top
| Gene Symbol: | SETDB2 ( C13orf4,CLLD8,CLLL8,DKFZp586I0123,DKFZp761J1217,KMT1F ) |
|---|---|
| Gene Full Name: | SET domain, bifurcated 2 |
| Band: | 13q14.2 |
| Quick Links | Entrez ID:83852; OMIM: 607865; Uniprot ID:SETB2_HUMAN; ENSEMBL ID: ENSG00000136169; HGNC ID: 20263 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.631789
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 16 / 564012 | 28 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 30 / 1939121 | 15 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 2 / 34366 | 58 |  |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 1 / 263845 | 3 |  |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 80 / 3360307 | 23 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 4 / 104616 | 38 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 3 / 124949 | 24 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 3 / 123478 | 24 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 16 / 1100989 | 14 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 0 / 211054 | 0 | |
| heart | 4 / 89626 | 44 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 0 / 24145 | 0 | |
| liver | 5 / 207743 | 24 | |
| lung | 3 / 336974 | 8 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 19 / 91610 | 207 |  |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 8 / 214812 | 37 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 5 / 280825 | 17 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 5 / 210574 | 23 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 0 / 96619 | 0 | |
| testis | 15 / 330442 | 45 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 5 / 232878 | 21 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P341532
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 9.37 ± 0.26 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 9.13 ± 0.17 | |
| Basal Part of Pons | 9.06 ± 0.38 | |
| Cerebellar Cortex | 9.14 ± 0.56 | |
| Cerebellar Nuclei | 9.28 ± 0.27 | |
| Claustrum | 9.57 ± 0.24 | |
| Epithalamus | 9.25 ± 0.36 | |
| Frontal Lobe | 9.07 ± 0.39 | |
| Globus Pallidus | 9.26 ± 0.2 | |
| Hypothalamus | 9.1 ± 0.52 | |
| Insula | 9.36 ± 0.33 | |
| Limbic Lobe | 9.2 ± 0.31 | |
| Mesencephalon | 9.21 ± 0.28 | |
| Myelencephalon | 9.14 ± 0.4 | |
| Occipital Lobe | 9.29 ± 0.21 | |
| Parietal Lobe | 9.1 ± 0.25 | |
| Pontine Tegmentum | 9.18 ± 0.32 | |
| Striatum | 8.9 ± 0.35 | |
| Subthalamus | 9.34 ± 0.21 | |
| Temporal Lobe | 9.21 ± 0.37 | |
| Thalamus | 9 ± 0.28 | |
| White Matter | 9.71 ± 0.27 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Setdb2 | CB | Cerebellum | 1.01 | |
| 1.33 | | |||
| Setdb2 | CTX | Cerebral cortex | 1.73 | |
| 1.46 | | |||
| Setdb2 | HIP | Hippocampal region | 2.53 | |
| 2.76 | | |||
| Setdb2 | HPF | Hippocampal formation | 2.25 | |
| 2.2 | | |||
| Setdb2 | HY | Hypothalamus | 1.22 | |
| 0.85 | | |||
| Setdb2 | LSX | Lateral septal complex | 0.72 | |
| 0.56 | | |||
| Setdb2 | MB | Midbrain | 0.48 | |
| 0.78 | | |||
| Setdb2 | MY | Medulla | 0.58 | |
| 0.7 | | |||
| Setdb2 | OLF | Olfactory bulb | 5.53 | |
| 5.51 | | |||
| Setdb2 | P | Pons | 0.82 | |
| 1.04 | | |||
| Setdb2 | PAL | Pallidum | 0.56 | |
| 0.47 | | |||
| Setdb2 | RHP | Retrohippocampal region | 1.77 | |
| 1.41 | | |||
| Setdb2 | sAMY | Striatum-like amygdalar nuclei | 0.45 | |
| 0.37 | | |||
| Setdb2 | STR | Striatum | 0.81 | |
| 0.64 | | |||
| Setdb2 | STRd | Striatum dorsal region | 0.76 | |
| 0.66 | | |||
| Setdb2 | STRv | Striatum ventral region | 1.24 | |
| 0.79 | | |||
| Setdb2 | TH | Thalamus | 0.52 | |
| 0.49 | |