Annotation Detail for HMCN1
Basic Information Top
| Gene Symbol: | HMCN1 ( ARMD1,FBLN6,FIBL-6,FIBL6 ) |
|---|---|
| Gene Full Name: | hemicentin 1 |
| Band: | 1q25.3-q31.1 |
| Quick Links | Entrez ID:83872; OMIM: 608548; Uniprot ID:HMCN1_HUMAN; ENSEMBL ID: ENSG00000143341; HGNC ID: 19194 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.58877
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 8 / 564012 | 14 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 35 / 1939121 | 18 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 5 / 82823 | 60 |  |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 4 / 119369 | 33 | |
| germ cell tumor | 4 / 263845 | 15 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 10 / 136302 | 73 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 33 / 3360307 | 9 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 6 / 124949 | 48 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 8 / 1100989 | 7 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 4 / 149255 | 26 | |
| ear | 2 / 16212 | 123 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 0 / 211054 | 0 | |
| heart | 0 / 89626 | 0 | |
| intestine | 3 / 234472 | 12 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 4 / 24145 | 165 | |
| liver | 3 / 207743 | 14 | |
| lung | 7 / 336974 | 20 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 9 / 67052 | 134 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 1 / 280825 | 3 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 6 / 210574 | 28 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 2 / 96619 | 20 | |
| testis | 3 / 330442 | 9 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 4 / 52413 | 76 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 1 / 232878 | 4 | |
| vascular | 5 / 51780 | 96 | |
- Probe name: A_32_P447539
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.32 ± 1.04 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.9 ± 0.28 | |
| Basal Part of Pons | 1.44 ± 0.32 | |
| Cerebellar Cortex | 1.69 ± 0.78 | |
| Cerebellar Nuclei | 2.09 ± 0.78 | |
| Claustrum | 2.68 ± 0.89 | |
| Epithalamus | 1.5 ± 0.78 | |
| Frontal Lobe | 1.64 ± 0.63 | |
| Globus Pallidus | 2.39 ± 0.28 | |
| Hypothalamus | 1.9 ± 0.67 | |
| Insula | 1.72 ± 0.66 | |
| Limbic Lobe | 1.76 ± 0.61 | |
| Mesencephalon | 1.98 ± 0.7 | |
| Myelencephalon | 1.88 ± 0.7 | |
| Occipital Lobe | 1.91 ± 0.73 | |
| Parietal Lobe | 1.75 ± 0.57 | |
| Pontine Tegmentum | 1.85 ± 0.68 | |
| Striatum | 1.98 ± 0.64 | |
| Subthalamus | 1.93 ± 0.7 | |
| Temporal Lobe | 1.77 ± 0.73 | |
| Thalamus | 1.85 ± 0.59 | |
| White Matter | 2.48 ± 0.54 | |
Mouse Brain ISH 
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00803640 | 16 | 5538 | 5553 | LVSLPFGIATNQDLIR | Peptide Atlas |