Annotation Detail for TBC1D10A
Basic Information Top
| Gene Symbol: | TBC1D10A ( EPI64,TBC1D10,dJ130H16.1,dJ130H16.2 ) |
|---|---|
| Gene Full Name: | TBC1 domain family, member 10A |
| Band: | 22q12.2 |
| Quick Links | Entrez ID:83874; OMIM: 610020; Uniprot ID:TB10A_HUMAN; ENSEMBL ID: ENSG00000099992; HGNC ID: 23609 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.655273
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 47 / 564012 | 83 | |
| neonate | 1 / 31097 | 32 |  |
| infant | 1 / 23620 | 42 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 133 / 1939121 | 68 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 13 / 94178 | 138 | |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 7 / 263845 | 26 | |
| glioma | 7 / 106883 | 65 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 8 / 95842 | 83 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 221 / 3360307 | 65 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 6 / 125680 | 47 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 4 / 124949 | 32 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 5 / 90257 | 55 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 22 / 123478 | 178 | |
| bone | 4 / 71655 | 55 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 47 / 1100989 | 42 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 4 / 149255 | 26 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 5 / 215722 | 23 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 9 / 211054 | 42 | |
| heart | 1 / 89626 | 11 | |
| intestine | 4 / 234472 | 17 | |
| kidney | 8 / 211777 | 37 | |
| larynx | 0 / 24145 | 0 | |
| liver | 7 / 207743 | 33 | |
| lung | 8 / 336974 | 23 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 19 / 153271 | 123 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 5 / 102051 | 48 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 66 / 280825 | 235 |  |
| prostate | 5 / 189345 | 26 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 13 / 210574 | 61 | |
| spleen | 7 / 53952 | 129 | |
| stomach | 4 / 96619 | 41 | |
| testis | 15 / 330442 | 45 | |
| thymus | 5 / 81131 | 61 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 1 / 13680 | 73 | |
| uterus | 6 / 232878 | 25 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_11236_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.92 ± 0.58 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.34 ± 0.35 | |
| Basal Part of Pons | 4.75 ± 0.35 | |
| Cerebellar Cortex | 4.94 ± 0.44 | |
| Cerebellar Nuclei | 4.94 ± 0.37 | |
| Claustrum | 5.84 ± 0.72 | |
| Epithalamus | 4.56 ± 0.64 | |
| Frontal Lobe | 5.13 ± 0.56 | |
| Globus Pallidus | 5.27 ± 0.34 | |
| Hypothalamus | 5.21 ± 0.6 | |
| Insula | 5.14 ± 0.41 | |
| Limbic Lobe | 5.47 ± 0.5 | |
| Mesencephalon | 5.3 ± 0.47 | |
| Myelencephalon | 5.27 ± 0.6 | |
| Occipital Lobe | 5.42 ± 0.58 | |
| Parietal Lobe | 5.3 ± 0.56 | |
| Pontine Tegmentum | 5.38 ± 0.6 | |
| Striatum | 5.91 ± 0.49 | |
| Subthalamus | 4.97 ± 0.22 | |
| Temporal Lobe | 5.23 ± 0.48 | |
| Thalamus | 5.27 ± 0.47 | |
| White Matter | 4.48 ± 0.71 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Tbc1d10a | CB | Cerebellum | 2.39 | |
| 3.19 | | |||
| Tbc1d10a | CTX | Cerebral cortex | 28.36 | |
| 22.54 | | |||
| Tbc1d10a | HIP | Hippocampal region | 24.91 | |
| 31.25 | | |||
| Tbc1d10a | HPF | Hippocampal formation | 19.54 | |
| 21.58 | | |||
| Tbc1d10a | HY | Hypothalamus | 2.32 | |
| 4.18 | | |||
| Tbc1d10a | LSX | Lateral septal complex | 1.66 | |
| 1.45 | | |||
| Tbc1d10a | MB | Midbrain | 1.14 | |
| 1.85 | | |||
| Tbc1d10a | MY | Medulla | 1.13 | |
| 2.44 | | |||
| Tbc1d10a | OLF | Olfactory bulb | 12.94 | |
| 12.7 | | |||
| Tbc1d10a | P | Pons | 3.71 | |
| 5.52 | | |||
| Tbc1d10a | PAL | Pallidum | 4.13 | |
| 3.84 | | |||
| Tbc1d10a | RHP | Retrohippocampal region | 11.07 | |
| 9.27 | | |||
| Tbc1d10a | sAMY | Striatum-like amygdalar nuclei | 14.02 | |
| 15.67 | | |||
| Tbc1d10a | STR | Striatum | 6.9 | |
| 5.52 | | |||
| Tbc1d10a | STRd | Striatum dorsal region | 6.57 | |
| 4.83 | | |||
| Tbc1d10a | STRv | Striatum ventral region | 8.5 | |
| 6.61 | | |||
| Tbc1d10a | TH | Thalamus | 2.59 | |
| 1.99 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00879658 | 11 | 161 | 171 | QFPFHEMFVSR | Peptide Atlas |
| TB10A_HUMAN_161 | 11 | 161 | 171 | QFPFHEMFVSR | PRIDE |