Annotation Detail for CDCA7
Basic Information Top
| Gene Symbol: | CDCA7 ( FLJ14722,FLJ14736,JPO1,MGC34109 ) |
|---|---|
| Gene Full Name: | cell division cycle associated 7 |
| Band: | 2q31.1 |
| Quick Links | Entrez ID:83879; OMIM: 609937; Uniprot ID:CDCA7_HUMAN; ENSEMBL ID: ENSG00000144354; HGNC ID: 14628 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.470654
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 4 / 62319 | 64 | |
| fetus | 48 / 564012 | 85 | |
| neonate | 7 / 31097 | 225 |  |
| infant | 4 / 23620 | 169 | |
| juvenile | 12 / 55556 | 215 | |
| adult | 79 / 1939121 | 40 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 3 / 34366 | 87 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 18 / 114246 | 157 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 6 / 119369 | 50 | |
| germ cell tumor | 49 / 263845 | 185 | |
| glioma | 4 / 106883 | 37 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 5 / 68959 | 72 | |
| leukemia | 16 / 95842 | 166 | |
| liver tumor | 4 / 96359 | 41 | |
| lung tumor | 1 / 103127 | 9 |  |
| lymphoma | 7 / 71755 | 97 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 111 / 3360307 | 33 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 11 / 125680 | 87 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 7 / 46356 | 151 | |
| skin tumor | 3 / 124949 | 24 | |
| soft tissue/muscle tissue tumor | 9 / 125191 | 71 | |
| uterine tumor | 14 / 90257 | 155 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 4 / 29757 | 134 | |
| blood | 6 / 123478 | 48 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 5 / 48801 | 102 | |
| brain | 30 / 1100989 | 27 | |
| cervix | 3 / 48171 | 62 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 14 / 215722 | 64 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 9 / 211054 | 42 | |
| heart | 3 / 89626 | 33 | |
| intestine | 23 / 234472 | 98 | |
| kidney | 7 / 211777 | 33 | |
| larynx | 0 / 24145 | 0 | |
| liver | 6 / 207743 | 28 | |
| lung | 9 / 336974 | 26 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 18 / 91610 | 196 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 13 / 280825 | 46 | |
| prostate | 3 / 189345 | 15 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 8 / 210574 | 37 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 4 / 96619 | 41 | |
| testis | 30 / 330442 | 90 | |
| thymus | 11 / 81131 | 135 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 2 / 13680 | 146 | |
| uterus | 24 / 232878 | 103 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_24_P171549
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.14 ± 1 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.7 ± 0.21 | |
| Basal Part of Pons | 1.42 ± 0.41 | |
| Cerebellar Cortex | 1.52 ± 0.46 | |
| Cerebellar Nuclei | 2.06 ± 0.76 | |
| Claustrum | 2.52 ± 0.76 | |
| Epithalamus | 1.46 ± 0.74 | |
| Frontal Lobe | 1.57 ± 0.62 | |
| Globus Pallidus | 2.45 ± 0.85 | |
| Hypothalamus | 1.79 ± 0.63 | |
| Insula | 1.63 ± 0.51 | |
| Limbic Lobe | 1.74 ± 0.6 | |
| Mesencephalon | 1.88 ± 0.65 | |
| Myelencephalon | 1.75 ± 0.64 | |
| Occipital Lobe | 1.75 ± 0.57 | |
| Parietal Lobe | 1.74 ± 0.62 | |
| Pontine Tegmentum | 1.79 ± 0.65 | |
| Striatum | 1.97 ± 0.66 | |
| Subthalamus | 1.92 ± 0.66 | |
| Temporal Lobe | 1.61 ± 0.57 | |
| Thalamus | 1.71 ± 0.55 | |
| White Matter | 2.22 ± 0.41 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Cdca7 | CB | Cerebellum | 100 | |
| 100 | | |||
| Cdca7 | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Cdca7 | HIP | Hippocampal region | 100 | |
| 100 | | |||
| Cdca7 | HPF | Hippocampal formation | 100 | |
| 100 | | |||
| Cdca7 | HY | Hypothalamus | 100 | |
| 100 | | |||
| Cdca7 | LSX | Lateral septal complex | 100 | |
| 100 | | |||
| Cdca7 | MB | Midbrain | 100 | |
| 100 | | |||
| Cdca7 | MY | Medulla | 100 | |
| 100 | | |||
| Cdca7 | OLF | Olfactory bulb | 100 | |
| 100 | | |||
| Cdca7 | P | Pons | 100 | |
| 100 | | |||
| Cdca7 | PAL | Pallidum | 100 | |
| 100 | | |||
| Cdca7 | RHP | Retrohippocampal region | 100 | |
| 100 | | |||
| Cdca7 | sAMY | Striatum-like amygdalar nuclei | 100 | |
| 100 | | |||
| Cdca7 | STR | Striatum | 100 | |
| 100 | | |||
| Cdca7 | STRd | Striatum dorsal region | 100 | |
| 100 | | |||
| Cdca7 | STRv | Striatum ventral region | 100 | |
| 100 | | |||
| Cdca7 | TH | Thalamus | 100 | |
| 100 | |