Annotation Detail for TATDN1
Basic Information Top
| Gene Symbol: | TATDN1 ( FLJ43280 ) |
|---|---|
| Gene Full Name: | TatD DNase domain containing 1 |
| Band: | 8q24.13 |
| Quick Links | Entrez ID:83940; OMIM: NA; Uniprot ID:TATD1_HUMAN; ENSEMBL ID: ENSG00000147687; HGNC ID: 24220 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.170568
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 3 / 62319 | 48 | |
| fetus | 8 / 564012 | 14 | |
| neonate | 3 / 31097 | 96 |  |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 90 / 1939121 | 46 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 3 / 12794 | 234 |  |
| bladder carcinoma | 23 / 17475 | 1316 |  |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 5 / 114246 | 43 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 6 / 119369 | 50 | |
| germ cell tumor | 18 / 263845 | 68 | |
| glioma | 6 / 106883 | 56 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 18 / 95842 | 187 | |
| liver tumor | 1 / 96359 | 10 |  |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 115 / 3360307 | 34 | |
| ovarian tumor | 5 / 76682 | 65 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 8 / 125680 | 63 | |
| prostate cancer | 14 / 102680 | 136 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 5 / 124949 | 40 | |
| soft tissue/muscle tissue tumor | 28 / 125191 | 223 | |
| uterine tumor | 5 / 90257 | 55 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 3 / 13106 | 228 | |
| adrenal gland | 4 / 33197 | 120 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 24 / 29757 | 806 | |
| blood | 0 / 123478 | 0 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 17 / 48801 | 348 | |
| brain | 40 / 1100989 | 36 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 26 / 149255 | 174 | |
| ear | 3 / 16212 | 185 | |
| embryonic tissue | 7 / 215722 | 32 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 6 / 211054 | 28 | |
| heart | 3 / 89626 | 33 | |
| intestine | 8 / 234472 | 34 | |
| kidney | 8 / 211777 | 37 | |
| larynx | 0 / 24145 | 0 | |
| liver | 14 / 207743 | 67 | |
| lung | 9 / 336974 | 26 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 11 / 107715 | 102 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 5 / 102051 | 48 | |
| pancreas | 12 / 214812 | 55 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 7 / 16585 | 422 | |
| placenta | 1 / 280825 | 3 | |
| prostate | 16 / 189345 | 84 | |
| salivary gland | 12 / 20155 | 595 | |
| skin | 6 / 210574 | 28 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 6 / 96619 | 62 | |
| testis | 33 / 330442 | 99 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 3 / 13680 | 219 | |
| uterus | 8 / 232878 | 34 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P254978
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.99 ± 0.33 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.93 ± 0.16 | |
| Basal Part of Pons | 6.06 ± 0.26 | |
| Cerebellar Cortex | 5.97 ± 0.24 | |
| Cerebellar Nuclei | 5.98 ± 0.26 | |
| Claustrum | 5.77 ± 0.51 | |
| Epithalamus | 5.55 ± 0.53 | |
| Frontal Lobe | 5.98 ± 0.31 | |
| Globus Pallidus | 6.4 ± 0.22 | |
| Hypothalamus | 5.74 ± 0.36 | |
| Insula | 5.77 ± 0.3 | |
| Limbic Lobe | 5.91 ± 0.37 | |
| Mesencephalon | 5.95 ± 0.36 | |
| Myelencephalon | 5.86 ± 0.39 | |
| Occipital Lobe | 5.61 ± 0.38 | |
| Parietal Lobe | 5.86 ± 0.31 | |
| Pontine Tegmentum | 5.93 ± 0.36 | |
| Striatum | 5.68 ± 0.32 | |
| Subthalamus | 6.18 ± 0.07 | |
| Temporal Lobe | 5.91 ± 0.31 | |
| Thalamus | 5.8 ± 0.27 | |
| White Matter | 6.98 ± 0.26 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Tatdn1 | CB | Cerebellum | 0 | |
| 0 | | |||
| Tatdn1 | CTX | Cerebral cortex | 0 | |
| 0 | | |||
| Tatdn1 | HIP | Hippocampal region | 0 | |
| 0 | | |||
| Tatdn1 | HPF | Hippocampal formation | 0 | |
| 0 | | |||
| Tatdn1 | HY | Hypothalamus | 0 | |
| 0 | | |||
| Tatdn1 | LSX | Lateral septal complex | 0 | |
| 0 | | |||
| Tatdn1 | MB | Midbrain | 0 | |
| 0 | | |||
| Tatdn1 | MY | Medulla | 0 | |
| 0 | | |||
| Tatdn1 | OLF | Olfactory bulb | 0 | |
| 0 | | |||
| Tatdn1 | P | Pons | 0 | |
| 0 | | |||
| Tatdn1 | PAL | Pallidum | 0 | |
| 0 | | |||
| Tatdn1 | RHP | Retrohippocampal region | 0 | |
| 0 | | |||
| Tatdn1 | sAMY | Striatum-like amygdalar nuclei | 0 | |
| 0 | | |||
| Tatdn1 | STR | Striatum | 0 | |
| 0 | | |||
| Tatdn1 | STRd | Striatum dorsal region | 0 | |
| 0 | | |||
| Tatdn1 | STRv | Striatum ventral region | 0 | |
| 0 | | |||
| Tatdn1 | TH | Thalamus | 0 | |
| 0 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00001447 | 13 | 168 | 180 | CVGGVVHSFDGTK | Peptide Atlas |