Annotation Detail for SLC4A11
Basic Information Top
| Gene Symbol: | SLC4A11 ( BTR1,CHED2,MGC126418,MGC126419,NABC1,dJ794I6.2 ) |
|---|---|
| Gene Full Name: | solute carrier family 4, sodium borate transporter, member 11 |
| Band: | 20p13 |
| Quick Links | Entrez ID:83959; OMIM: 610206; Uniprot ID:S4A11_HUMAN; ENSEMBL ID: ENSG00000088836; HGNC ID: 16438 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.105607
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 2 / 62319 | 32 |  |
| fetus | 0 / 564012 | 0 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 20 / 1939121 | 10 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 5 / 136302 | 36 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 7 / 95842 | 73 |  |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 21 / 3360307 | 6 | |
| ovarian tumor | 5 / 76682 | 65 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 3 / 40015 | 74 | |
| bladder | 0 / 29757 | 0 | |
| blood | 6 / 123478 | 48 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 9 / 1100989 | 8 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 7 / 211054 | 33 | |
| heart | 0 / 89626 | 0 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 6 / 336974 | 17 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 5 / 67052 | 74 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 6 / 102051 | 58 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 0 / 330442 | 0 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 1 / 232878 | 4 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P143309
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 1.98 ± 0.97 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.54 ± 0.18 | |
| Basal Part of Pons | 1.24 ± 0.33 | |
| Cerebellar Cortex | 1.35 ± 0.63 | |
| Cerebellar Nuclei | 1.81 ± 0.72 | |
| Claustrum | 2.4 ± 0.83 | |
| Epithalamus | 1.28 ± 0.7 | |
| Frontal Lobe | 1.4 ± 0.64 | |
| Globus Pallidus | 2.13 ± 0.34 | |
| Hypothalamus | 1.66 ± 0.69 | |
| Insula | 1.47 ± 0.51 | |
| Limbic Lobe | 1.54 ± 0.59 | |
| Mesencephalon | 1.69 ± 0.66 | |
| Myelencephalon | 1.57 ± 0.65 | |
| Occipital Lobe | 1.61 ± 0.54 | |
| Parietal Lobe | 1.53 ± 0.61 | |
| Pontine Tegmentum | 1.62 ± 0.65 | |
| Striatum | 1.79 ± 0.54 | |
| Subthalamus | 1.67 ± 0.59 | |
| Temporal Lobe | 1.44 ± 0.56 | |
| Thalamus | 1.51 ± 0.54 | |
| White Matter | 2.39 ± 0.61 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Slc4a11 | CB | Cerebellum | 7.44 | |
| 7.76 | | |||
| Slc4a11 | CTX | Cerebral cortex | 16.98 | |
| 11.65 | | |||
| Slc4a11 | HIP | Hippocampal region | 4.37 | |
| 3.69 | | |||
| Slc4a11 | HPF | Hippocampal formation | 3.45 | |
| 2.68 | | |||
| Slc4a11 | HY | Hypothalamus | 1.89 | |
| 1.59 | | |||
| Slc4a11 | LSX | Lateral septal complex | 0.84 | |
| 0.93 | | |||
| Slc4a11 | MB | Midbrain | 0.85 | |
| 0.99 | | |||
| Slc4a11 | MY | Medulla | 1.87 | |
| 2.15 | | |||
| Slc4a11 | OLF | Olfactory bulb | 11.77 | |
| 9.41 | | |||
| Slc4a11 | P | Pons | 0.86 | |
| 1.07 | | |||
| Slc4a11 | PAL | Pallidum | 4.04 | |
| 3.82 | | |||
| Slc4a11 | RHP | Retrohippocampal region | 1.99 | |
| 1.33 | | |||
| Slc4a11 | sAMY | Striatum-like amygdalar nuclei | 7.86 | |
| 5.25 | | |||
| Slc4a11 | STR | Striatum | 6.86 | |
| 4.51 | | |||
| Slc4a11 | STRd | Striatum dorsal region | 6.12 | |
| 3.84 | | |||
| Slc4a11 | STRv | Striatum ventral region | 11.89 | |
| 7.93 | | |||
| Slc4a11 | TH | Thalamus | 1.2 | |
| 1.04 | |