Annotation Detail for PLA2G6
Basic Information Top
| Gene Symbol: | PLA2G6 ( CaI-PLA2,GVI,INAD1,IPLA2-VIA,NBIA2A,NBIA2B,PARK14,PLA2,PNPLA9,iPLA2 ) |
|---|---|
| Gene Full Name: | phospholipase A2, group VI (cytosolic, calcium-independent) |
| Band: | 22q13.1 |
| Quick Links | Entrez ID:8398; OMIM: 603604; Uniprot ID:PA2G6_HUMAN; ENSEMBL ID: ENSG00000184381; HGNC ID: 9039 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.170479
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 3 / 62319 | 48 |  |
| fetus | 35 / 564012 | 62 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 75 / 1939121 | 38 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 4 / 17475 | 228 |  |
| breast (mammary gland) tumor | 4 / 94178 | 42 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 |  |
| germ cell tumor | 17 / 263845 | 64 | |
| glioma | 4 / 106883 | 37 | |
| head and neck tumor | 6 / 136302 | 44 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 201 / 3360307 | 59 | |
| ovarian tumor | 3 / 76682 | 39 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 3 / 125680 | 23 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 2 / 29757 | 67 | |
| blood | 3 / 123478 | 24 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 117 / 1100989 | 106 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 5 / 215722 | 23 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 10 / 211054 | 47 | |
| heart | 0 / 89626 | 0 | |
| intestine | 11 / 234472 | 46 | |
| kidney | 7 / 211777 | 33 | |
| larynx | 0 / 24145 | 0 | |
| liver | 2 / 207743 | 9 | |
| lung | 5 / 336974 | 14 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 7 / 153271 | 45 | |
| mouth | 6 / 67052 | 89 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 3 / 214812 | 13 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 19 / 280825 | 67 | |
| prostate | 7 / 189345 | 36 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 4 / 210574 | 18 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 2 / 96619 | 20 | |
| testis | 87 / 330442 | 263 | |
| thymus | 29 / 81131 | 357 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 9 / 52413 | 171 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 25 / 232878 | 107 | |
| vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 215938_s_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 6.4 | |
| Adipocyte | 5.1 | |
| AdrenalCortex | 5.65 | |
| Adrenalgland | 4.35 | |
| Amygdala | 5.5 | |
| Appendix | 5.15 | |
| AtrioventricularNode | 4.2 | |
| BDCA4+_DentriticCells | 5.65 | |
| Bonemarrow | 5.05 | |
| BronchialEpithelialCells | 5.1 | |
| CD105+_Endothelial | 5.2 | |
| CD14+_Monocytes | 5 | |
| CD19+_BCells(neg._sel.) | 5.55 | |
| CD33+_Myeloid | 6.25 | |
| CD34+ | 7.85 | |
| CD4+_Tcells | 5.8 | |
| CD56+_NKCells | 10.65 | |
| CD71+_EarlyErythroid | 4.85 | |
| CD8+_Tcells | 7.25 | |
| CardiacMyocytes | 6.5 | |
| Caudatenucleus | 4.7 | |
| Cerebellum | 4.7 | |
| CerebellumPeduncles | 5.85 | |
| CiliaryGanglion | 3.7 | |
| CingulateCortex | 5.05 | |
| Colorectaladenocarcinoma | 4.8 | |
| DorsalRootGanglion | 4.05 | |
| FetalThyroid | 6.55 | |
| Fetalbrain | 5.5 | |
| Fetalliver | 4.2 | |
| Fetallung | 4.15 | |
| GlobusPallidus | 5.65 | |
| Heart | 6.45 | |
| Hypothalamus | 5.6 | |
| Kidney | 4.05 | |
| Leukemia_chronicMyelogenousK-562 | 4.25 | |
| Leukemia_promyelocytic-HL-60 | 4.55 | |
| Leukemialymphoblastic(MOLT-4) | 4 | |
| Liver | 6.65 | |
| Lung | 6.1 | |
| Lymphnode | 5.35 | |
| Lymphoma_burkitts(Daudi) | 6.7 | |
| Lymphoma_burkitts(Raji) | 14.4 | |
| MedullaOblongata | 4.75 | |
| OccipitalLobe | 4.8 | |
| OlfactoryBulb | 4.05 | |
| Ovary | 3.4 | |
| Pancreas | 4.15 | |
| PancreaticIslet | 5.5 | |
| ParietalLobe | 7.55 | |
| Pituitary | 6.05 | |
| Placenta | 4.95 | |
| Pons | 6.85 | |
| PrefrontalCortex | 8.95 | |
| Prostate | 6.1 | |
| Salivarygland | 4.05 | |
| SkeletalMuscle | 6.1 | |
| Skin | 4.05 | |
| SmoothMuscle | 5.6 | |
| Spinalcord | 5.55 | |
| SubthalamicNucleus | 4.6 | |
| SuperiorCervicalGanglion | 8.9 | |
| TemporalLobe | 4.75 | |
| Testis | 26.95 | |
| TestisGermCell | 9 | |
| TestisIntersitial | 7.6 | |
| TestisLeydigCell | 5.3 | |
| TestisSeminiferousTubule | 5.2 | |
| Thalamus | 5.25 | |
| Thymus | 4.1 | |
| Thyroid | 6.6 | |
| Tongue | 8.05 | |
| Tonsil | 7.05 | |
| Trachea | 4.35 | |
| TrigeminalGanglion | 5.3 | |
| Uterus | 4.25 | |
| UterusCorpus | 5.4 | |
| WholeBlood | 5.15 | |
| Wholebrain | 4.95 | |
| colon | 5.2 | |
| pineal_day | 11.14 | |
| pineal_night | 7.46 | |
| retina | 5.825 | |
| small_intestine | 4.8 | |
- Probe name: CUST_16677_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.91 ± 0.82 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.78 ± 0.57 | |
| Basal Part of Pons | 4.13 ± 0.72 | |
| Cerebellar Cortex | 4.12 ± 0.52 | |
| Cerebellar Nuclei | 3.6 ± 0.56 | |
| Claustrum | 3.59 ± 0.68 | |
| Epithalamus | 3.92 ± 0.83 | |
| Frontal Lobe | 3.93 ± 0.61 | |
| Globus Pallidus | 3.22 ± 0.74 | |
| Hypothalamus | 3.55 ± 0.56 | |
| Insula | 3.85 ± 0.54 | |
| Limbic Lobe | 3.7 ± 0.74 | |
| Mesencephalon | 3.63 ± 0.6 | |
| Myelencephalon | 3.78 ± 0.66 | |
| Occipital Lobe | 3.48 ± 0.6 | |
| Parietal Lobe | 3.8 ± 0.65 | |
| Pontine Tegmentum | 3.65 ± 0.63 | |
| Striatum | 3.17 ± 0.68 | |
| Subthalamus | 3.74 ± 0.42 | |
| Temporal Lobe | 3.94 ± 0.56 | |
| Thalamus | 3.7 ± 0.69 | |
| White Matter | 4.39 ± 0.69 | |
Mouse Brain ISH 