Annotation Detail for SPNS1
Basic Information Top
| Gene Symbol: | SPNS1 ( FLJ38358,HSpin1,LAT,PP2030,SPIN1,SPINL,nrs ) |
|---|---|
| Gene Full Name: | spinster homolog 1 (Drosophila) |
| Band: | 16p11.2 |
| Quick Links | Entrez ID:83985; OMIM: 612583; Uniprot ID:SPNS1_HUMAN; ENSEMBL ID: ENSG00000169682; HGNC ID: 30621 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.617449
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 3 / 62319 | 48 | |
| fetus | 20 / 564012 | 35 | |
| neonate | 1 / 31097 | 32 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 131 / 1939121 | 67 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 2 / 17475 | 114 | |
| breast (mammary gland) tumor | 4 / 94178 | 42 | |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 8 / 82823 | 96 | |
| colorectal tumor | 7 / 114246 | 61 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 16 / 119369 | 134 | |
| germ cell tumor | 15 / 263845 | 56 | |
| glioma | 9 / 106883 | 84 | |
| head and neck tumor | 5 / 136302 | 36 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 13 / 95842 | 135 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 6 / 103127 | 58 | |
| lymphoma | 5 / 71755 | 69 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 164 / 3360307 | 48 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 9 / 104616 | 86 | |
| primitive neuroectodermal tumor of the CNS | 24 / 125680 | 190 | |
| prostate cancer | 4 / 102680 | 38 | |
| retinoblastoma | 7 / 46356 | 151 | |
| skin tumor | 33 / 124949 | 264 |  |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 |  |
| uterine tumor | 7 / 90257 | 77 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 3 / 29757 | 100 | |
| blood | 30 / 123478 | 242 | |
| bone | 6 / 71655 | 83 | |
| bone marrow | 5 / 48801 | 102 | |
| brain | 41 / 1100989 | 37 | |
| cervix | 10 / 48171 | 207 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 15 / 215722 | 69 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 24 / 211054 | 113 | |
| heart | 2 / 89626 | 22 | |
| intestine | 17 / 234472 | 72 | |
| kidney | 7 / 211777 | 33 | |
| larynx | 3 / 24145 | 124 | |
| liver | 3 / 207743 | 14 | |
| lung | 13 / 336974 | 38 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 3 / 91610 | 32 | |
| mammary gland | 5 / 153271 | 32 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 2 / 15768 | 126 | |
| ovary | 7 / 102051 | 68 | |
| pancreas | 11 / 214812 | 51 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 22 / 280825 | 78 | |
| prostate | 5 / 189345 | 26 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 36 / 210574 | 170 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 8 / 96619 | 82 | |
| testis | 9 / 330442 | 27 | |
| thymus | 4 / 81131 | 49 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 10 / 232878 | 42 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_10649_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.54 ± 0.57 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.16 ± 0.29 | |
| Basal Part of Pons | 3.78 ± 0.74 | |
| Cerebellar Cortex | 3.96 ± 0.56 | |
| Cerebellar Nuclei | 3.44 ± 0.72 | |
| Claustrum | 3.07 ± 0.76 | |
| Epithalamus | 3.73 ± 0.68 | |
| Frontal Lobe | 3.75 ± 0.69 | |
| Globus Pallidus | 3.3 ± 0.42 | |
| Hypothalamus | 3.58 ± 0.63 | |
| Insula | 3.56 ± 0.57 | |
| Limbic Lobe | 3.43 ± 0.59 | |
| Mesencephalon | 3.62 ± 0.63 | |
| Myelencephalon | 3.6 ± 0.59 | |
| Occipital Lobe | 3.27 ± 0.68 | |
| Parietal Lobe | 3.47 ± 0.65 | |
| Pontine Tegmentum | 3.47 ± 0.64 | |
| Striatum | 3.35 ± 0.67 | |
| Subthalamus | 3.29 ± 0.72 | |
| Temporal Lobe | 3.7 ± 0.6 | |
| Thalamus | 3.68 ± 0.59 | |
| White Matter | 3.94 ± 0.53 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 2210013K02Rik | CB | Cerebellum | 0 | |
| 0 | | |||
| 2210013K02Rik | CTX | Cerebral cortex | 0 | |
| 0 | | |||
| 2210013K02Rik | HIP | Hippocampal region | 0 | |
| 0 | | |||
| 2210013K02Rik | HPF | Hippocampal formation | 0 | |
| 0 | | |||
| 2210013K02Rik | HY | Hypothalamus | 0 | |
| 0 | | |||
| 2210013K02Rik | LSX | Lateral septal complex | 0 | |
| 0 | | |||
| 2210013K02Rik | MB | Midbrain | 0 | |
| 0 | | |||
| 2210013K02Rik | MY | Medulla | 0 | |
| 0 | | |||
| 2210013K02Rik | OLF | Olfactory bulb | 0 | |
| 0 | | |||
| 2210013K02Rik | P | Pons | 0 | |
| 0 | | |||
| 2210013K02Rik | PAL | Pallidum | 0 | |
| 0 | | |||
| 2210013K02Rik | RHP | Retrohippocampal region | 0 | |
| 0 | | |||
| 2210013K02Rik | sAMY | Striatum-like amygdalar nuclei | 0 | |
| 0 | | |||
| 2210013K02Rik | STR | Striatum | 0 | |
| 0 | | |||
| 2210013K02Rik | STRd | Striatum dorsal region | 0 | |
| 0 | | |||
| 2210013K02Rik | STRv | Striatum ventral region | 0 | |
| 0 | | |||
| 2210013K02Rik | TH | Thalamus | 0 | |
| 0 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00039511 | 18 | 418 | 435 | AQLHVQGLLHEAGSTDDR | Peptide Atlas |