Annotation Detail for ITFG3
Basic Information Top
| Gene Symbol: | ITFG3 ( C16orf9,DKFZp761D0211,FLJ32603,gs19 ) |
|---|---|
| Gene Full Name: | integrin alpha FG-GAP repeat containing 3 |
| Band: | 16p13.3 |
| Quick Links | Entrez ID:83986; OMIM: NA; Uniprot ID:ITFG3_HUMAN; ENSEMBL ID: ENSG00000167930; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.513225
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 11 / 62319 | 176 | |
| fetus | 15 / 564012 | 26 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 5 / 23620 | 211 |  |
| juvenile | 0 / 55556 | 0 | |
| adult | 125 / 1939121 | 64 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 3 / 12794 | 234 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 4 / 94178 | 42 | |
| cervical tumor | 5 / 34366 | 145 | |
| chondrosarcoma | 12 / 82823 | 144 | |
| colorectal tumor | 11 / 114246 | 96 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 20 / 119369 | 167 | |
| germ cell tumor | 13 / 263845 | 49 | |
| glioma | 12 / 106883 | 112 | |
| head and neck tumor | 1 / 136302 | 7 |  |
| kidney tumor | 10 / 68959 | 145 | |
| leukemia | 11 / 95842 | 114 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 6 / 103127 | 58 | |
| lymphoma | 2 / 71755 | 27 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 144 / 3360307 | 42 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 12 / 104616 | 114 | |
| primitive neuroectodermal tumor of the CNS | 10 / 125680 | 79 | |
| prostate cancer | 19 / 102680 | 185 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 12 / 124949 | 96 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 5 / 90257 | 55 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 3 / 33197 | 90 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 2 / 29757 | 67 | |
| blood | 8 / 123478 | 64 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 48 / 1100989 | 43 | |
| cervix | 9 / 48171 | 186 | |
| connective tissue | 6 / 149255 | 40 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 22 / 215722 | 101 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 8 / 211054 | 37 | |
| heart | 4 / 89626 | 44 | |
| intestine | 21 / 234472 | 89 | |
| kidney | 14 / 211777 | 66 | |
| larynx | 1 / 24145 | 41 | |
| liver | 2 / 207743 | 9 | |
| lung | 22 / 336974 | 65 | |
| lymph | 2 / 44270 | 45 | |
| lymph node | 5 / 91610 | 54 | |
| mammary gland | 5 / 153271 | 32 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 7 / 107715 | 64 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 10 / 102051 | 97 | |
| pancreas | 12 / 214812 | 55 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 2 / 16585 | 120 | |
| placenta | 10 / 280825 | 35 | |
| prostate | 29 / 189345 | 153 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 21 / 210574 | 99 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 19 / 96619 | 196 | |
| testis | 8 / 330442 | 24 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 1 / 16999 | 58 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 13 / 232878 | 55 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_8768_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.34 ± 0.96 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.8 ± 0.35 | |
| Basal Part of Pons | 1.91 ± 0.5 | |
| Cerebellar Cortex | 2.3 ± 0.68 | |
| Cerebellar Nuclei | 2.28 ± 0.65 | |
| Claustrum | 2.49 ± 0.66 | |
| Epithalamus | 1.72 ± 0.8 | |
| Frontal Lobe | 2.07 ± 0.79 | |
| Globus Pallidus | 2.42 ± 0.69 | |
| Hypothalamus | 1.94 ± 0.78 | |
| Insula | 1.9 ± 0.52 | |
| Limbic Lobe | 2.11 ± 0.89 | |
| Mesencephalon | 2.25 ± 0.79 | |
| Myelencephalon | 2.18 ± 0.78 | |
| Occipital Lobe | 2.28 ± 0.71 | |
| Parietal Lobe | 2.33 ± 0.74 | |
| Pontine Tegmentum | 2.17 ± 0.74 | |
| Striatum | 1.86 ± 0.74 | |
| Subthalamus | 2.1 ± 0.73 | |
| Temporal Lobe | 2.02 ± 0.66 | |
| Thalamus | 2.04 ± 0.68 | |
| White Matter | 3.89 ± 0.33 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Itfg3 | CB | Cerebellum | 9.84 | |
| 11.19 | | |||
| Itfg3 | CTX | Cerebral cortex | 4.79 | |
| 3.27 | | |||
| Itfg3 | HIP | Hippocampal region | 3.39 | |
| 3.08 | | |||
| Itfg3 | HPF | Hippocampal formation | 4.22 | |
| 3.38 | | |||
| Itfg3 | HY | Hypothalamus | 1.05 | |
| 0.72 | | |||
| Itfg3 | LSX | Lateral septal complex | 2.03 | |
| 1.43 | | |||
| Itfg3 | MB | Midbrain | 2.03 | |
| 1.75 | | |||
| Itfg3 | MY | Medulla | 5.85 | |
| 6.07 | | |||
| Itfg3 | OLF | Olfactory bulb | 5.77 | |
| 3.83 | | |||
| Itfg3 | P | Pons | 3.73 | |
| 3.59 | | |||
| Itfg3 | PAL | Pallidum | 2.08 | |
| 1.55 | | |||
| Itfg3 | RHP | Retrohippocampal region | 5.93 | |
| 4.01 | | |||
| Itfg3 | sAMY | Striatum-like amygdalar nuclei | 1.19 | |
| 0.88 | | |||
| Itfg3 | STR | Striatum | 2.28 | |
| 1.54 | | |||
| Itfg3 | STRd | Striatum dorsal region | 3.13 | |
| 2.15 | | |||
| Itfg3 | STRv | Striatum ventral region | 0.36 | |
| 0.19 | | |||
| Itfg3 | TH | Thalamus | 2.78 | |
| 2.48 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00153999 | 23 | 491 | 513 | HAAYILLTGPADSEAPGLVSVIK | Peptide Atlas |