Annotation Detail for NCALD
Basic Information Top
| Gene Symbol: | NCALD ( MGC33870,MGC74858 ) |
|---|---|
| Gene Full Name: | neurocalcin delta |
| Band: | 8q22.3 |
| Quick Links | Entrez ID:83988; OMIM: 606722; Uniprot ID:NCALD_HUMAN; ENSEMBL ID: ENSG00000104490; HGNC ID: 7655 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.680132
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 83 / 564012 | 147 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 4 / 23620 | 169 | |
| juvenile | 3 / 55556 | 53 | |
| adult | 99 / 1939121 | 51 | |
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 0 / 564012 | 0 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 0 / 1939121 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 14 / 263845 | 53 | |
| glioma | 8 / 106883 | 74 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 10 / 68959 | 145 | |
| leukemia | 1 / 95842 | 10 |  |
| liver tumor | 6 / 96359 | 62 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 10 / 97250 | 102 | |
| normal | 448 / 3360307 | 133 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 10 / 125680 | 79 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 8 / 124949 | 64 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 7 / 90257 | 77 | |
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 1 / 3360307 | 0 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 2 / 13106 | 152 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 1 / 123478 | 8 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 394 / 1100989 | 357 |  |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 1 / 16212 | 61 | |
| embryonic tissue | 4 / 215722 | 18 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 18 / 211054 | 85 | |
| heart | 5 / 89626 | 55 | |
| intestine | 4 / 234472 | 17 | |
| kidney | 16 / 211777 | 75 | |
| larynx | 2 / 24145 | 82 | |
| liver | 7 / 207743 | 33 | |
| lung | 5 / 336974 | 14 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 13 / 214812 | 60 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 1 / 280825 | 3 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 4 / 20155 | 198 | |
| skin | 11 / 210574 | 52 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 3 / 96619 | 31 | |
| testis | 15 / 330442 | 45 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 45 / 52413 | 858 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 12 / 232878 | 51 | |
| vascular | 0 / 51780 | 0 | |
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 0 / 1100989 | 0 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 0 / 211054 | 0 | |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 0 / 211777 | 0 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 0 / 336974 | 0 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 1 / 330442 | 3 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 211685_s_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 68.95 | |
| Adipocyte | 3.6 | |
| AdrenalCortex | 3.65 | |
| Adrenalgland | 3.05 | |
| Amygdala | 33.55 | |
| Appendix | 4.45 | |
| AtrioventricularNode | 2.75 | |
| BDCA4+_DentriticCells | 3.65 | |
| Bonemarrow | 3.35 | |
| BronchialEpithelialCells | 3.1 | |
| CD105+_Endothelial | 3.25 | |
| CD14+_Monocytes | 3.9 | |
| CD19+_BCells(neg._sel.) | 4.1 | |
| CD33+_Myeloid | 5 | |
| CD34+ | 4.6 | |
| CD4+_Tcells | 5.65 | |
| CD56+_NKCells | 136.2 | |
| CD71+_EarlyErythroid | 3 | |
| CD8+_Tcells | 22.65 | |
| CardiacMyocytes | 4.3 | |
| Caudatenucleus | 3.6 | |
| Cerebellum | 2.9 | |
| CerebellumPeduncles | 3.75 | |
| CiliaryGanglion | 2.75 | |
| CingulateCortex | 163.15 | |
| Colorectaladenocarcinoma | 3.55 | |
| DorsalRootGanglion | 2.95 | |
| FetalThyroid | 3.9 | |
| Fetalbrain | 58.65 | |
| Fetalliver | 3.3 | |
| Fetallung | 3.4 | |
| GlobusPallidus | 126.95 | |
| Heart | 4.5 | |
| Hypothalamus | 98 | |
| Kidney | 3.15 | |
| Leukemia_chronicMyelogenousK-562 | 3.3 | |
| Leukemia_promyelocytic-HL-60 | 3.3 | |
| Leukemialymphoblastic(MOLT-4) | 3.1 | |
| Liver | 4.95 | |
| Lung | 4.95 | |
| Lymphnode | 3.5 | |
| Lymphoma_burkitts(Daudi) | 4.2 | |
| Lymphoma_burkitts(Raji) | 10.9 | |
| MedullaOblongata | 127.25 | |
| OccipitalLobe | 146.15 | |
| OlfactoryBulb | 3.2 | |
| Ovary | 2.6 | |
| Pancreas | 2.8 | |
| PancreaticIslet | 4.25 | |
| ParietalLobe | 139.65 | |
| Pituitary | 4.7 | |
| Placenta | 4.2 | |
| Pons | 38.4 | |
| PrefrontalCortex | 234.65 | |
| Prostate | 4.55 | |
| Salivarygland | 34.65 | |
| SkeletalMuscle | 4.4 | |
| Skin | 8.35 | |
| SmoothMuscle | 3.45 | |
| Spinalcord | 4.1 | |
| SubthalamicNucleus | 152.95 | |
| SuperiorCervicalGanglion | 4.35 | |
| TemporalLobe | 133.6 | |
| Testis | 5.95 | |
| TestisGermCell | 5.4 | |
| TestisIntersitial | 3.35 | |
| TestisLeydigCell | 3.8 | |
| TestisSeminiferousTubule | 3.4 | |
| Thalamus | 167.25 | |
| Thymus | 2.65 | |
| Thyroid | 4.2 | |
| Tongue | 3.15 | |
| Tonsil | 3.75 | |
| Trachea | 30.15 | |
| TrigeminalGanglion | 3.8 | |
| Uterus | 2.95 | |
| UterusCorpus | 3.55 | |
| WholeBlood | 4.45 | |
| Wholebrain | 279.05 | |
| colon | 4.05 | |
| pineal_day | 170.84 | |
| pineal_night | 355.06 | |
| retina | 25.475 | |
| small_intestine | 3.9 | |
- Probe name: A_23_P215883
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 8.65 ± 0.84 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 8.79 ± 0.56 | |
| Basal Part of Pons | 7.79 ± 0.31 | |
| Cerebellar Cortex | 7.84 ± 0.47 | |
| Cerebellar Nuclei | 6.95 ± 0.28 | |
| Claustrum | 8.26 ± 0.25 | |
| Epithalamus | 7.87 ± 0.58 | |
| Frontal Lobe | 8.7 ± 0.76 | |
| Globus Pallidus | 7.2 ± 1.45 | |
| Hypothalamus | 7.72 ± 0.85 | |
| Insula | 8.84 ± 0.3 | |
| Limbic Lobe | 9.18 ± 0.79 | |
| Mesencephalon | 8.26 ± 0.7 | |
| Myelencephalon | 8.54 ± 0.81 | |
| Occipital Lobe | 9.34 ± 0.57 | |
| Parietal Lobe | 8.89 ± 0.72 | |
| Pontine Tegmentum | 8.71 ± 0.92 | |
| Striatum | 6.97 ± 1.39 | |
| Subthalamus | 6.7 ± 0.43 | |
| Temporal Lobe | 8.91 ± 0.44 | |
| Thalamus | 9.04 ± 0.64 | |
| White Matter | 6.8 ± 1.2 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Ncald | CB | Cerebellum | 74.39 | |
| 99.23 | | |||
| Ncald | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Ncald | HIP | Hippocampal region | 100 | |
| 100 | | |||
| Ncald | HPF | Hippocampal formation | 100 | |
| 100 | | |||
| Ncald | HY | Hypothalamus | 97.72 | |
| 100 | | |||
| Ncald | LSX | Lateral septal complex | 100 | |
| 100 | | |||
| Ncald | MB | Midbrain | 89.7 | |
| 99.38 | | |||
| Ncald | MY | Medulla | 70.55 | |
| 91.4 | | |||
| Ncald | OLF | Olfactory bulb | 100 | |
| 100 | | |||
| Ncald | P | Pons | 70.99 | |
| 89.31 | | |||
| Ncald | PAL | Pallidum | 77.66 | |
| 89.63 | | |||
| Ncald | RHP | Retrohippocampal region | 100 | |
| 100 | | |||
| Ncald | sAMY | Striatum-like amygdalar nuclei | 100 | |
| 100 | | |||
| Ncald | STR | Striatum | 55.9 | |
| 72.81 | | |||
| Ncald | STRd | Striatum dorsal region | 34.53 | |
| 47.99 | | |||
| Ncald | STRv | Striatum ventral region | 49.61 | |
| 43.72 | | |||
| Ncald | TH | Thalamus | 94.09 | |
| 100 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp01039521 | 14 | 161 | 174 | DGKLSLEEFIRGAK | Peptide Atlas |