Annotation Detail for KATNAL1
Basic Information Top
| Gene Symbol: | KATNAL1 ( MGC2599 ) |
|---|---|
| Gene Full Name: | katanin p60 subunit A-like 1 |
| Band: | 13q12.3 |
| Quick Links | Entrez ID:84056; OMIM: NA; Uniprot ID:KATL1_HUMAN; ENSEMBL ID: ENSG00000102781; HGNC ID: 28361 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.243596
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 21 / 564012 | 37 |  |
| neonate | 2 / 31097 | 64 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 3 / 55556 | 53 | |
| adult | 37 / 1939121 | 19 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 8 / 82823 | 96 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 |  |
| germ cell tumor | 7 / 263845 | 26 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 81 / 3360307 | 24 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 2 / 123478 | 16 | |
| bone | 5 / 71655 | 69 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 13 / 1100989 | 11 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 2 / 16212 | 123 | |
| embryonic tissue | 5 / 215722 | 23 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 0 / 211054 | 0 | |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 3 / 211777 | 14 | |
| larynx | 0 / 24145 | 0 | |
| liver | 3 / 207743 | 14 | |
| lung | 4 / 336974 | 11 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 11 / 91610 | 120 | |
| mammary gland | 11 / 153271 | 71 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 6 / 210574 | 28 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 0 / 96619 | 0 | |
| testis | 18 / 330442 | 54 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 4 / 232878 | 17 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_23_P151415
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 8.57 ± 0.26 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 8.71 ± 0.11 | |
| Basal Part of Pons | 8.83 ± 0.16 | |
| Cerebellar Cortex | 8.68 ± 0.21 | |
| Cerebellar Nuclei | 8.56 ± 0.27 | |
| Claustrum | 9.1 ± 0.18 | |
| Epithalamus | 9.11 ± 0.34 | |
| Frontal Lobe | 8.81 ± 0.27 | |
| Globus Pallidus | 8.44 ± 0.22 | |
| Hypothalamus | 9.02 ± 0.25 | |
| Insula | 8.83 ± 0.18 | |
| Limbic Lobe | 8.63 ± 0.28 | |
| Mesencephalon | 8.7 ± 0.29 | |
| Myelencephalon | 8.7 ± 0.3 | |
| Occipital Lobe | 8.54 ± 0.34 | |
| Parietal Lobe | 8.76 ± 0.22 | |
| Pontine Tegmentum | 8.74 ± 0.28 | |
| Striatum | 8.4 ± 0.34 | |
| Subthalamus | 8.73 ± 0.25 | |
| Temporal Lobe | 8.79 ± 0.22 | |
| Thalamus | 8.77 ± 0.26 | |
| White Matter | 9.18 ± 0.19 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Katnal1 | CB | Cerebellum | 24.52 | |
| 65.89 | | |||
| Katnal1 | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Katnal1 | HIP | Hippocampal region | 87.6 | |
| 100 | | |||
| Katnal1 | HPF | Hippocampal formation | 77.7 | |
| 100 | | |||
| Katnal1 | HY | Hypothalamus | 49.44 | |
| 60.38 | | |||
| Katnal1 | LSX | Lateral septal complex | 60.48 | |
| 60.8 | | |||
| Katnal1 | MB | Midbrain | 35.12 | |
| 46.92 | | |||
| Katnal1 | MY | Medulla | 12.82 | |
| 23.45 | | |||
| Katnal1 | OLF | Olfactory bulb | 78 | |
| 100 | | |||
| Katnal1 | P | Pons | 27.28 | |
| 47.08 | | |||
| Katnal1 | PAL | Pallidum | 54.69 | |
| 68.16 | | |||
| Katnal1 | RHP | Retrohippocampal region | 52.91 | |
| 54.77 | | |||
| Katnal1 | sAMY | Striatum-like amygdalar nuclei | 40.86 | |
| 45.33 | | |||
| Katnal1 | STR | Striatum | 37.43 | |
| 37.17 | | |||
| Katnal1 | STRd | Striatum dorsal region | 26.36 | |
| 23.17 | | |||
| Katnal1 | STRv | Striatum ventral region | 61.29 | |
| 64.03 | | |||
| Katnal1 | TH | Thalamus | 73.65 | |
| 82.09 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00498897 | 17 | 78 | 94 | IDKPPDFPVSCQDEPFR | Peptide Atlas |