Annotation Detail for FAM160A2
Basic Information Top
| Gene Symbol: | FAM160A2 ( C11orf56,DKFZp566M1046,FLJ22665,KIAA1759 ) |
|---|---|
| Gene Full Name: | family with sequence similarity 160, member A2 |
| Band: | 11p15.4 |
| Quick Links | Entrez ID:84067; OMIM: NA; Uniprot ID:F16A2_HUMAN; ENSEMBL ID: ENSG00000051009; HGNC ID: 25378 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.501793
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 2 / 62319 | 32 | |
| fetus | 26 / 564012 | 46 | |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 61 / 1939121 | 31 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 6 / 114246 | 52 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 7 / 119369 | 58 | |
| germ cell tumor | 4 / 263845 | 15 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 4 / 136302 | 29 | |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 4 / 95842 | 41 | |
| liver tumor | 1 / 96359 | 10 |  |
| lung tumor | 7 / 103127 | 67 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 103 / 3360307 | 30 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 10 / 104616 | 95 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 5 / 124949 | 40 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 4 / 123478 | 32 | |
| bone | 4 / 71655 | 55 | |
| bone marrow | 4 / 48801 | 81 | |
| brain | 33 / 1100989 | 29 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 4 / 215722 | 18 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 3 / 211054 | 14 | |
| heart | 7 / 89626 | 78 | |
| intestine | 19 / 234472 | 81 | |
| kidney | 12 / 211777 | 56 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 9 / 336974 | 26 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 2 / 91610 | 21 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 3 / 67052 | 44 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 12 / 214812 | 55 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 9 / 280825 | 32 | |
| prostate | 5 / 189345 | 26 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 5 / 210574 | 23 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 6 / 96619 | 62 | |
| testis | 12 / 330442 | 36 | |
| thymus | 8 / 81131 | 98 | |
| thyroid | 3 / 47473 | 63 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 8 / 52413 | 152 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 6 / 232878 | 25 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P24796
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 8.36 ± 0.37 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 8.54 ± 0.31 | |
| Basal Part of Pons | 8.73 ± 0.21 | |
| Cerebellar Cortex | 8.72 ± 0.18 | |
| Cerebellar Nuclei | 8.19 ± 0.34 | |
| Claustrum | 8.27 ± 0.41 | |
| Epithalamus | 8.77 ± 0.51 | |
| Frontal Lobe | 8.6 ± 0.3 | |
| Globus Pallidus | 7.78 ± 0.14 | |
| Hypothalamus | 8.41 ± 0.24 | |
| Insula | 8.72 ± 0.14 | |
| Limbic Lobe | 8.52 ± 0.34 | |
| Mesencephalon | 8.26 ± 0.33 | |
| Myelencephalon | 8.45 ± 0.33 | |
| Occipital Lobe | 8.28 ± 0.29 | |
| Parietal Lobe | 8.43 ± 0.3 | |
| Pontine Tegmentum | 8.36 ± 0.3 | |
| Striatum | 8.17 ± 0.36 | |
| Subthalamus | 8.35 ± 0.25 | |
| Temporal Lobe | 8.65 ± 0.33 | |
| Thalamus | 8.35 ± 0.23 | |
| White Matter | 8.01 ± 0.32 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 4632419K20Rik | CB | Cerebellum | 36.04 | |
| 46.39 | | |||
| 4632419K20Rik | CTX | Cerebral cortex | 100 | |
| 86.79 | | |||
| 4632419K20Rik | HIP | Hippocampal region | 45.56 | |
| 60.07 | | |||
| 4632419K20Rik | HPF | Hippocampal formation | 57.69 | |
| 62.8 | | |||
| 4632419K20Rik | HY | Hypothalamus | 28.65 | |
| 21.56 | | |||
| 4632419K20Rik | LSX | Lateral septal complex | 25.15 | |
| 18.43 | | |||
| 4632419K20Rik | MB | Midbrain | 30.5 | |
| 26.66 | | |||
| 4632419K20Rik | MY | Medulla | 32.8 | |
| 30.25 | | |||
| 4632419K20Rik | OLF | Olfactory bulb | 70.99 | |
| 66.4 | | |||
| 4632419K20Rik | P | Pons | 27.56 | |
| 24.76 | | |||
| 4632419K20Rik | PAL | Pallidum | 31.65 | |
| 28.03 | | |||
| 4632419K20Rik | RHP | Retrohippocampal region | 78.4 | |
| 68.17 | | |||
| 4632419K20Rik | sAMY | Striatum-like amygdalar nuclei | 58.94 | |
| 44.95 | | |||
| 4632419K20Rik | STR | Striatum | 54.2 | |
| 41.86 | | |||
| 4632419K20Rik | STRd | Striatum dorsal region | 53.78 | |
| 41.56 | | |||
| 4632419K20Rik | STRv | Striatum ventral region | 65.88 | |
| 50.46 | | |||
| 4632419K20Rik | TH | Thalamus | 34.85 | |
| 28.68 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00501133 | 20 | 551 | 570 | RPTPAEEPGELEDNYLEYLR | Peptide Atlas |