Annotation Detail for CCDC55
Basic Information Top
| Gene Symbol: | CCDC55 ( DKFZp434K1421,FLJ37233,HSPC095 ) |
|---|---|
| Gene Full Name: | coiled-coil domain containing 55 |
| Band: | 17q11.2 |
| Quick Links | Entrez ID:84081; OMIM: NA; Uniprot ID:CCD55_HUMAN; ENSEMBL ID: ENSG00000126653; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.462663
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 27 / 564012 | 47 | |
| neonate | 3 / 31097 | 96 |  |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 57 / 1939121 | 29 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 2 / 17475 | 114 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 5 / 82823 | 60 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 2 / 17290 | 115 | |
| gastrointestinal tumor | 1 / 119369 | 8 |  |
| germ cell tumor | 2 / 263845 | 7 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 10 / 136302 | 73 | |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 101 / 3360307 | 30 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 4 / 124949 | 32 | |
| soft tissue/muscle tissue tumor | 5 / 125191 | 39 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 2 / 29757 | 67 | |
| blood | 3 / 123478 | 24 | |
| bone | 7 / 71655 | 97 | |
| bone marrow | 4 / 48801 | 81 | |
| brain | 22 / 1100989 | 19 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 5 / 215722 | 23 | |
| esophagus | 2 / 20209 | 98 | |
| eye | 4 / 211054 | 18 | |
| heart | 2 / 89626 | 22 | |
| intestine | 6 / 234472 | 25 | |
| kidney | 13 / 211777 | 61 | |
| larynx | 5 / 24145 | 207 |  |
| liver | 8 / 207743 | 38 | |
| lung | 4 / 336974 | 11 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 5 / 153271 | 32 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 3 / 15768 | 190 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 1 / 280825 | 3 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 8 / 210574 | 37 | |
| spleen | 3 / 53952 | 55 | |
| stomach | 4 / 96619 | 41 | |
| testis | 10 / 330442 | 30 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 4 / 47473 | 84 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 8 / 232878 | 34 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: A_23_P27180
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.06 ± 0.31 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.57 ± 0.24 | |
| Basal Part of Pons | 7.43 ± 0.19 | |
| Cerebellar Cortex | 7.47 ± 0.14 | |
| Cerebellar Nuclei | 7.71 ± 0.23 | |
| Claustrum | 7.18 ± 0.3 | |
| Epithalamus | 8.03 ± 0.25 | |
| Frontal Lobe | 7.36 ± 0.29 | |
| Globus Pallidus | 8.3 ± 0.2 | |
| Hypothalamus | 7.38 ± 0.22 | |
| Insula | 7.28 ± 0.14 | |
| Limbic Lobe | 7.12 ± 0.25 | |
| Mesencephalon | 7.59 ± 0.25 | |
| Myelencephalon | 7.41 ± 0.31 | |
| Occipital Lobe | 7.47 ± 0.4 | |
| Parietal Lobe | 7.45 ± 0.26 | |
| Pontine Tegmentum | 7.4 ± 0.26 | |
| Striatum | 7.58 ± 0.4 | |
| Subthalamus | 7.84 ± 0.25 | |
| Temporal Lobe | 7.3 ± 0.26 | |
| Thalamus | 7.55 ± 0.22 | |
| White Matter | 8.38 ± 0.45 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Ccdc55 | CB | Cerebellum | 12.11 | |
| 13 | | |||
| Ccdc55 | CTX | Cerebral cortex | 22.75 | |
| 15.64 | | |||
| Ccdc55 | HIP | Hippocampal region | 17.48 | |
| 17.1 | | |||
| Ccdc55 | HPF | Hippocampal formation | 17.25 | |
| 15.61 | | |||
| Ccdc55 | HY | Hypothalamus | 7.34 | |
| 5.62 | | |||
| Ccdc55 | LSX | Lateral septal complex | 2.53 | |
| 1.64 | | |||
| Ccdc55 | MB | Midbrain | 14.6 | |
| 12.79 | | |||
| Ccdc55 | MY | Medulla | 18.83 | |
| 18.77 | | |||
| Ccdc55 | OLF | Olfactory bulb | 21.73 | |
| 17.78 | | |||
| Ccdc55 | P | Pons | 17.32 | |
| 18.62 | | |||
| Ccdc55 | PAL | Pallidum | 8.43 | |
| 6.94 | | |||
| Ccdc55 | RHP | Retrohippocampal region | 16.97 | |
| 13.6 | | |||
| Ccdc55 | sAMY | Striatum-like amygdalar nuclei | 7.67 | |
| 5.69 | | |||
| Ccdc55 | STR | Striatum | 6.49 | |
| 4.46 | | |||
| Ccdc55 | STRd | Striatum dorsal region | 6.39 | |
| 4.47 | | |||
| Ccdc55 | STRv | Striatum ventral region | 8.25 | |
| 5.25 | | |||
| Ccdc55 | TH | Thalamus | 15.77 | |
| 12.01 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00003421 | 18 | 186 | 203 | HLLNQAVGEEEVPKCSFR | Peptide Atlas |