Annotation Detail for FBXO30
Basic Information Top
| Gene Symbol: | FBXO30 ( FLJ41030,Fbx30,MGC21674 ) |
|---|---|
| Gene Full Name: | F-box protein 30 |
| Band: | 6q24.3 |
| Quick Links | Entrez ID:84085; OMIM: 609101; Uniprot ID:FBX30_HUMAN; ENSEMBL ID: ENSG00000118496; HGNC ID: 15600 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.421095
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 16 / 564012 | 28 | |
| neonate | 1 / 31097 | 32 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 4 / 55556 | 71 |  |
| adult | 37 / 1939121 | 19 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 2 / 263845 | 7 |  |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 4 / 96359 | 41 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 75 / 3360307 | 22 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
| uterine tumor | 6 / 90257 | 66 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 12 / 1100989 | 10 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 4 / 215722 | 18 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 8 / 211054 | 37 | |
| heart | 3 / 89626 | 33 | |
| intestine | 4 / 234472 | 17 | |
| kidney | 5 / 211777 | 23 | |
| larynx | 1 / 24145 | 41 | |
| liver | 7 / 207743 | 33 | |
| lung | 7 / 336974 | 20 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 6 / 91610 | 65 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 2 / 214812 | 9 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 6 / 280825 | 21 | |
| prostate | 3 / 189345 | 15 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 17 / 330442 | 51 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 1 / 13680 | 73 | |
| uterus | 15 / 232878 | 64 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: CUST_12096_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.65 ± 0.4 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.06 ± 0.32 | |
| Basal Part of Pons | 6.15 ± 0.29 | |
| Cerebellar Cortex | 6.6 ± 0.24 | |
| Cerebellar Nuclei | 6.79 ± 0.29 | |
| Claustrum | 7.19 ± 0.46 | |
| Epithalamus | 6.8 ± 0.28 | |
| Frontal Lobe | 6.44 ± 0.42 | |
| Globus Pallidus | 7.52 ± 0.2 | |
| Hypothalamus | 7.04 ± 0.29 | |
| Insula | 6.39 ± 0.41 | |
| Limbic Lobe | 6.46 ± 0.48 | |
| Mesencephalon | 6.93 ± 0.38 | |
| Myelencephalon | 6.67 ± 0.41 | |
| Occipital Lobe | 6.87 ± 0.42 | |
| Parietal Lobe | 6.63 ± 0.43 | |
| Pontine Tegmentum | 6.75 ± 0.31 | |
| Striatum | 6.7 ± 0.42 | |
| Subthalamus | 6.9 ± 0.08 | |
| Temporal Lobe | 6.48 ± 0.35 | |
| Thalamus | 6.68 ± 0.27 | |
| White Matter | 7.37 ± 0.55 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Fbxo30 | CB | Cerebellum | 4.71 | |
| 5.69 | | |||
| Fbxo30 | CTX | Cerebral cortex | 1.76 | |
| 2.24 | | |||
| Fbxo30 | HIP | Hippocampal region | 0.6 | |
| 0.64 | | |||
| Fbxo30 | HPF | Hippocampal formation | 0.58 | |
| 0.6 | | |||
| Fbxo30 | HY | Hypothalamus | 0.48 | |
| 0.72 | | |||
| Fbxo30 | LSX | Lateral septal complex | 0 | |
| 0 | | |||
| Fbxo30 | MB | Midbrain | 0.78 | |
| 1.29 | | |||
| Fbxo30 | MY | Medulla | 1.93 | |
| 2.64 | | |||
| Fbxo30 | OLF | Olfactory bulb | 12.78 | |
| 13.84 | | |||
| Fbxo30 | P | Pons | 2.14 | |
| 3.25 | | |||
| Fbxo30 | PAL | Pallidum | 0.33 | |
| 0.4 | | |||
| Fbxo30 | RHP | Retrohippocampal region | 0.54 | |
| 0.55 | | |||
| Fbxo30 | sAMY | Striatum-like amygdalar nuclei | 0.66 | |
| 1.01 | | |||
| Fbxo30 | STR | Striatum | 0.33 | |
| 0.38 | | |||
| Fbxo30 | STRd | Striatum dorsal region | 0.24 | |
| 0.25 | | |||
| Fbxo30 | STRv | Striatum ventral region | 0.44 | |
| 0.51 | | |||
| Fbxo30 | TH | Thalamus | 0.39 | |
| 0.49 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| FBX30_HUMAN_113 | 18 | 113 | 130 | DVDEVAQLDMALALQDQR | PRIDE |
| PAp00077328 | 17 | 586 | 602 | SFGVQPCVSTVLVEPAR | Peptide Atlas |