Annotation Detail for CEP78
Basic Information Top
| Gene Symbol: | CEP78 ( C9orf81,FLJ12643,FLJ52093,IP63,MGC135040 ) |
|---|---|
| Gene Full Name: | centrosomal protein 78kDa |
| Band: | 9q21.2 |
| Quick Links | Entrez ID:84131; OMIM: NA; Uniprot ID:CEP78_HUMAN; ENSEMBL ID: ENSG00000148019; HGNC ID: 25740 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.374421
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 7 / 62319 | 112 |  |
| fetus | 18 / 564012 | 31 | |
| neonate | 0 / 31097 | 0 | |
| infant | 2 / 23620 | 84 | |
| juvenile | 3 / 55556 | 53 | |
| adult | 27 / 1939121 | 13 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 8 / 119369 | 67 | |
| germ cell tumor | 12 / 263845 | 45 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 1 / 95842 | 10 |  |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 6 / 71755 | 83 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 63 / 3360307 | 18 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 6 / 125191 | 47 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 2 / 29757 | 67 | |
| blood | 2 / 123478 | 16 | |
| bone | 5 / 71655 | 69 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 10 / 1100989 | 9 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 14 / 215722 | 64 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 5 / 211054 | 23 | |
| heart | 6 / 89626 | 66 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 2 / 336974 | 5 | |
| lymph | 6 / 44270 | 135 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 4 / 280825 | 14 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 0 / 210574 | 0 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 7 / 96619 | 72 | |
| testis | 5 / 330442 | 15 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 6 / 232878 | 25 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_1019_PI416379584
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.97 ± 0.66 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.55 ± 0.57 | |
| Basal Part of Pons | 3.9 ± 0.4 | |
| Cerebellar Cortex | 4.35 ± 0.3 | |
| Cerebellar Nuclei | 3.88 ± 0.68 | |
| Claustrum | 3.54 ± 0.87 | |
| Epithalamus | 3.94 ± 0.4 | |
| Frontal Lobe | 3.93 ± 0.48 | |
| Globus Pallidus | 3.66 ± 0.53 | |
| Hypothalamus | 3.93 ± 0.34 | |
| Insula | 4.19 ± 0.27 | |
| Limbic Lobe | 3.8 ± 0.5 | |
| Mesencephalon | 3.98 ± 0.58 | |
| Myelencephalon | 3.83 ± 0.53 | |
| Occipital Lobe | 3.62 ± 0.55 | |
| Parietal Lobe | 3.95 ± 0.5 | |
| Pontine Tegmentum | 3.92 ± 0.54 | |
| Striatum | 3.59 ± 0.61 | |
| Subthalamus | 3.99 ± 0.29 | |
| Temporal Lobe | 3.95 ± 0.47 | |
| Thalamus | 3.73 ± 0.56 | |
| White Matter | 4.85 ± 0.5 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Cep78 | CB | Cerebellum | 6.83 | |
| 8.87 | | |||
| Cep78 | CTX | Cerebral cortex | 5.78 | |
| 4.2 | | |||
| Cep78 | HIP | Hippocampal region | 7.9 | |
| 6.88 | | |||
| Cep78 | HPF | Hippocampal formation | 10.71 | |
| 9.07 | | |||
| Cep78 | HY | Hypothalamus | 1.7 | |
| 1.27 | | |||
| Cep78 | LSX | Lateral septal complex | 3.01 | |
| 2.27 | | |||
| Cep78 | MB | Midbrain | 7.45 | |
| 6.57 | | |||
| Cep78 | MY | Medulla | 21.96 | |
| 24.51 | | |||
| Cep78 | OLF | Olfactory bulb | 5.38 | |
| 3.58 | | |||
| Cep78 | P | Pons | 17.71 | |
| 18.16 | | |||
| Cep78 | PAL | Pallidum | 3.66 | |
| 2.78 | | |||
| Cep78 | RHP | Retrohippocampal region | 14.16 | |
| 10.83 | | |||
| Cep78 | sAMY | Striatum-like amygdalar nuclei | 2.31 | |
| 1.76 | | |||
| Cep78 | STR | Striatum | 2.08 | |
| 1.44 | | |||
| Cep78 | STRd | Striatum dorsal region | 1.55 | |
| 1.04 | | |||
| Cep78 | STRv | Striatum ventral region | 3.21 | |
| 2.1 | | |||
| Cep78 | TH | Thalamus | 2.38 | |
| 1.73 | |