AutismKB 2.0

Annotation Detail for ARID5B


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Basic Information Top
Gene Symbol:ARID5B ( DESRT,FLJ21150,MRF2 )
Gene Full Name: AT rich interactive domain 5B (MRF1-like)
Band: 10q21.2
Quick LinksEntrez ID:84159; OMIM: 608538; Uniprot ID:ARI5B_HUMAN; ENSEMBL ID: ENSG00000150347; HGNC ID: 17362
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body5 / 7076170
blastocyst0 / 623190 
fetus23 / 56401240
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult109 / 193912156
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma2 / 17475114
breast (mammary gland) tumor5 / 9417853
cervical tumor2 / 3436658
chondrosarcoma4 / 8282348
colorectal tumor17 / 114246148
esophageal tumor3 / 17290173
gastrointestinal tumor1 / 1193698
germ cell tumor3 / 26384511
glioma4 / 10688337
head and neck tumor6 / 13630244
kidney tumor2 / 6895929
leukemia13 / 95842135
liver tumor1 / 9635910
lung tumor2 / 10312719
lymphoma5 / 7175569
non-neoplasia2 / 9725020
normal162 / 336030748
ovarian tumor8 / 76682104
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer2 / 10268019
retinoblastoma0 / 463560 
skin tumor3 / 12494924
soft tissue/muscle tissue tumor8 / 12519163
uterine tumor7 / 9025777
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder3 / 29757100
blood10 / 12347880
bone0 / 716550 
bone marrow4 / 4880181
brain11 / 11009899
cervix2 / 4817141
connective tissue5 / 14925533
ear6 / 16212370
embryonic tissue6 / 21572227
esophagus3 / 20209148
eye11 / 21105452
heart5 / 8962655
intestine17 / 23447272
kidney14 / 21177766
larynx5 / 24145207
liver9 / 20774343
lung14 / 33697441
lymph0 / 442700 
lymph node11 / 91610120
mammary gland15 / 15327197
mouth2 / 6705229
muscle8 / 10771574
nerve1 / 1576863
ovary11 / 102051107
pancreas3 / 21481213
parathyroid2 / 2053997
pharynx3 / 4132872
pituitary gland0 / 165850 
placenta15 / 28082553
prostate9 / 18934547
salivary gland0 / 201550 
skin13 / 21057461
spleen0 / 539520 
stomach2 / 9661920
testis4 / 33044212
thymus0 / 811310 
thyroid1 / 4747321
tonsil1 / 1699958
trachea2 / 5241338
umbilical cord0 / 136800 
uterus26 / 232878111
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 212614_at
Cell line Expression level Expression bar
721_B_lymphoblasts49.65
Adipocyte532
AdrenalCortex37.35
Adrenalgland63.55
Amygdala104.5
Appendix155.8
AtrioventricularNode64.4
BDCA4+_DentriticCells58.35
Bonemarrow25.35
BronchialEpithelialCells99.35
CD105+_Endothelial36.45
CD14+_Monocytes11.15
CD19+_BCells(neg._sel.)533.4
CD33+_Myeloid23.7
CD34+42.75
CD4+_Tcells228.55
CD56+_NKCells239.65
CD71+_EarlyErythroid11.35
CD8+_Tcells115.25
CardiacMyocytes236.25
Caudatenucleus56.1
Cerebellum33.1
CerebellumPeduncles42.9
CiliaryGanglion119.65
CingulateCortex167.85
Colorectaladenocarcinoma24.25
DorsalRootGanglion50.1
FetalThyroid32.65
Fetalbrain172.2
Fetalliver39.7
Fetallung226.2
GlobusPallidus90.35
Heart43.05
Hypothalamus176.25
Kidney124.7
Leukemia_chronicMyelogenousK-56226.55
Leukemia_promyelocytic-HL-6032.55
Leukemialymphoblastic(MOLT-4)140.35
Liver35.15
Lung45.4
Lymphnode300.05
Lymphoma_burkitts(Daudi)47.2
Lymphoma_burkitts(Raji)47
MedullaOblongata175.85
OccipitalLobe198.45
OlfactoryBulb99.95
Ovary177.6
Pancreas58.3
PancreaticIslet525.1
ParietalLobe157.85
Pituitary377.7
Placenta866.45
Pons81.2
PrefrontalCortex421
Prostate344.45
Salivarygland277.3
SkeletalMuscle228.55
Skin113.6
SmoothMuscle982.95
Spinalcord89.4
SubthalamicNucleus147.35
SuperiorCervicalGanglion64.9
TemporalLobe70.2
Testis76.2
TestisGermCell213.35
TestisIntersitial39.75
TestisLeydigCell58.7
TestisSeminiferousTubule70.95
Thalamus192.3
Thymus85.75
Thyroid59.55
Tongue108.1
Tonsil234.9
Trachea200.45
TrigeminalGanglion71.1
Uterus886.1
UterusCorpus912
WholeBlood51.9
Wholebrain109.6
colon146.45
pineal_day154.38
pineal_night182.14
retina222.575
small_intestine119.1
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P170667
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.98 ± 0.63
Basal Forebrain5.99 ± 0.86
Basal Part of Pons6.46 ± 0.5
Cerebellar Cortex5.76 ± 0.35
Cerebellar Nuclei6.47 ± 0.33
Claustrum6.07 ± 0.78
Epithalamus6.52 ± 0.5
Frontal Lobe6.63 ± 0.48
Globus Pallidus6.85 ± 0.46
Hypothalamus6.06 ± 0.48
Insula6.67 ± 0.4
Limbic Lobe6.13 ± 0.8
Mesencephalon6.23 ± 0.7
Myelencephalon6.41 ± 0.67
Occipital Lobe6.03 ± 0.67
Parietal Lobe6.55 ± 0.53
Pontine Tegmentum6.45 ± 0.62
Striatum5.99 ± 0.77
Subthalamus6.63 ± 0.53
Temporal Lobe6.52 ± 0.4
Thalamus6.9 ± 0.38
White Matter8.18 ± 0.54
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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