AutismKB 2.0

Annotation Detail for STX7


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Basic Information Top
Gene Symbol:STX7 ( - )
Gene Full Name: syntaxin 7
Band: 6q23.2
Quick LinksEntrez ID:8417; OMIM: 603217; Uniprot ID:STX7_HUMAN; ENSEMBL ID: ENSG00000079950; HGNC ID: 11442
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body6 / 7076184
blastocyst5 / 6231980
fetus91 / 564012161
neonate5 / 31097160
infant3 / 23620127
juvenile1 / 5555617
adult122 / 193912162
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma2 / 17475114
breast (mammary gland) tumor2 / 9417821
cervical tumor0 / 343660 
chondrosarcoma6 / 8282372
colorectal tumor4 / 11424635
esophageal tumor0 / 172900 
gastrointestinal tumor17 / 119369142
germ cell tumor14 / 26384553
glioma3 / 10688328
head and neck tumor2 / 13630214
kidney tumor5 / 6895972
leukemia9 / 9584293
liver tumor3 / 9635931
lung tumor1 / 1031279
lymphoma5 / 7175569
non-neoplasia8 / 9725082
normal440 / 3360307130
ovarian tumor2 / 7668226
pancreatic tumor14 / 104616133
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer7 / 10268068
retinoblastoma0 / 463560 
skin tumor15 / 124949120
soft tissue/muscle tissue tumor18 / 125191143
uterine tumor6 / 9025766
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland1 / 3319730
ascites4 / 4001599
bladder4 / 29757134
blood12 / 12347897
bone4 / 7165555
bone marrow2 / 4880140
brain204 / 1100989185
cervix0 / 481710 
connective tissue11 / 14925573
ear1 / 1621261
embryonic tissue17 / 21572278
esophagus0 / 202090 
eye11 / 21105452
heart7 / 8962678
intestine12 / 23447251
kidney19 / 21177789
larynx0 / 241450 
liver11 / 20774352
lung15 / 33697444
lymph1 / 4427022
lymph node48 / 91610523
mammary gland2 / 15327113
mouth4 / 6705259
muscle5 / 10771546
nerve1 / 1576863
ovary2 / 10205119
pancreas19 / 21481288
parathyroid1 / 2053948
pharynx2 / 4132848
pituitary gland1 / 1658560
placenta42 / 280825149
prostate11 / 18934558
salivary gland1 / 2015549
skin24 / 210574113
spleen4 / 5395274
stomach10 / 96619103
testis14 / 33044242
thymus7 / 8113186
thyroid1 / 4747321
tonsil2 / 16999117
trachea16 / 52413305
umbilical cord1 / 1368073
uterus32 / 232878137
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 212631_at
Cell line Expression level Expression bar
721_B_lymphoblasts53.1
Adipocyte7.5
AdrenalCortex6.45
Adrenalgland7.3
Amygdala18
Appendix9.2
AtrioventricularNode7
BDCA4+_DentriticCells232
Bonemarrow8.95
BronchialEpithelialCells8.7
CD105+_Endothelial32.6
CD14+_Monocytes108.65
CD19+_BCells(neg._sel.)254.05
CD33+_Myeloid142.95
CD34+105.75
CD4+_Tcells9
CD56+_NKCells47.1
CD71+_EarlyErythroid14.25
CD8+_Tcells8.65
CardiacMyocytes9.35
Caudatenucleus8.65
Cerebellum7.25
CerebellumPeduncles9.8
CiliaryGanglion6.15
CingulateCortex10.25
Colorectaladenocarcinoma7.25
DorsalRootGanglion7.75
FetalThyroid7.7
Fetalbrain38.35
Fetalliver7.6
Fetallung7.6
GlobusPallidus12.55
Heart9.15
Hypothalamus31.1
Kidney8.4
Leukemia_chronicMyelogenousK-5628.05
Leukemia_promyelocytic-HL-6010.45
Leukemialymphoblastic(MOLT-4)5.15
Liver9.8
Lung7.8
Lymphnode10.7
Lymphoma_burkitts(Daudi)15.6
Lymphoma_burkitts(Raji)12.15
MedullaOblongata15.55
OccipitalLobe30.85
OlfactoryBulb16.8
Ovary6.2
Pancreas6.5
PancreaticIslet7.4
ParietalLobe12.25
Pituitary10.5
Placenta37.55
Pons8.75
PrefrontalCortex18
Prostate8.9
Salivarygland10.5
SkeletalMuscle9.8
Skin5.7
SmoothMuscle10.05
Spinalcord41.7
SubthalamicNucleus22
SuperiorCervicalGanglion10.4
TemporalLobe12.25
Testis5.55
TestisGermCell6.2
TestisIntersitial7.25
TestisLeydigCell7.4
TestisSeminiferousTubule6.65
Thalamus20.2
Thymus4.9
Thyroid11.1
Tongue9.05
Tonsil18
Trachea7.55
TrigeminalGanglion9.6
Uterus7.75
UterusCorpus7.8
WholeBlood61.65
Wholebrain9.85
colon12.45
pineal_day43.4
pineal_night32.3
retina33.7
small_intestine11.45
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_14618_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.37 ± 0.18
Basal Forebrain8.34 ± 0.31
Basal Part of Pons8.3 ± 0.24
Cerebellar Cortex8.06 ± 0.23
Cerebellar Nuclei8.19 ± 0.32
Claustrum8.68 ± 0.4
Epithalamus8.16 ± 0.37
Frontal Lobe8.27 ± 0.3
Globus Pallidus8.57 ± 0.28
Hypothalamus8.14 ± 0.33
Insula8.22 ± 0.22
Limbic Lobe8.47 ± 0.36
Mesencephalon8.24 ± 0.4
Myelencephalon8.24 ± 0.34
Occipital Lobe8.18 ± 0.28
Parietal Lobe8.3 ± 0.32
Pontine Tegmentum8.28 ± 0.28
Striatum7.91 ± 0.32
Subthalamus8.27 ± 0.26
Temporal Lobe8.29 ± 0.25
Thalamus8.13 ± 0.27
White Matter9.17 ± 0.23
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Stx7CBCerebellum31.57
60.63
Stx7CTXCerebral cortex100
100
Stx7HIPHippocampal region82.59
100
Stx7HPFHippocampal formation90.29
100
Stx7HYHypothalamus72.77
76.01
Stx7LSXLateral septal complex93.7
96.74
Stx7MBMidbrain84.08
97.8
Stx7MYMedulla74.53
100
Stx7OLFOlfactory bulb99.86
100
Stx7PPons64.53
92.24
Stx7PALPallidum74.34
93.15
Stx7RHPRetrohippocampal region100
100
Stx7sAMYStriatum-like amygdalar nuclei90.34
94.05
Stx7STRStriatum63.61
59.96
Stx7STRdStriatum dorsal region55.11
51.45
Stx7STRvStriatum ventral region67.49
56.33
Stx7THThalamus76.5
79.87
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00001699 36 191 226 DLGMMIHEQGDVIDSIEANVENAEVHVQQANQQLSR Peptide Atlas
STX7_HUMAN_0 0 0 0 ITQCSVEIQR PRIDE
STX7_HUMAN_2 16 2 17 SYTPGVGGDPAQLAQR PRIDE
STX7_HUMAN_24 10 24 33 ITQCSVEIQR PRIDE
STX7_HUMAN_92 14 92 105 LVAEFTTSLTNFQK PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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