Annotation Detail for CHD6
Basic Information Top
| Gene Symbol: | CHD6 ( CHD5,KIAA1335,RIGB ) |
|---|---|
| Gene Full Name: | chromodomain helicase DNA binding protein 6 |
| Band: | 20q12 |
| Quick Links | Entrez ID:84181; OMIM: NA; Uniprot ID:CHD6_HUMAN; ENSEMBL ID: ENSG00000124177; HGNC ID: 19057 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.371979
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 18 / 564012 | 31 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 37 / 1939121 | 19 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 2 / 17475 | 114 |  |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 4 / 119369 | 33 | |
| germ cell tumor | 4 / 263845 | 15 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 66 / 3360307 | 19 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 3 / 124949 | 24 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 2 / 29757 | 67 | |
| blood | 1 / 123478 | 8 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 18 / 1100989 | 16 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 2 / 16212 | 123 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 5 / 211054 | 23 | |
| heart | 2 / 89626 | 22 | |
| intestine | 4 / 234472 | 17 | |
| kidney | 5 / 211777 | 23 | |
| larynx | 2 / 24145 | 82 | |
| liver | 5 / 207743 | 24 | |
| lung | 12 / 336974 | 35 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 4 / 91610 | 43 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 6 / 107715 | 55 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 4 / 102051 | 39 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 2 / 280825 | 7 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 4 / 210574 | 18 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 4 / 96619 | 41 | |
| testis | 8 / 330442 | 24 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 5 / 232878 | 21 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_23_P91217
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.3 ± 0.3 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.29 ± 0.33 | |
| Basal Part of Pons | 7.48 ± 0.27 | |
| Cerebellar Cortex | 7.15 ± 0.26 | |
| Cerebellar Nuclei | 7.38 ± 0.17 | |
| Claustrum | 7.38 ± 0.39 | |
| Epithalamus | 6.95 ± 0.2 | |
| Frontal Lobe | 7.07 ± 0.3 | |
| Globus Pallidus | 7.72 ± 0.22 | |
| Hypothalamus | 7.11 ± 0.32 | |
| Insula | 7 ± 0.38 | |
| Limbic Lobe | 7.15 ± 0.37 | |
| Mesencephalon | 7.26 ± 0.28 | |
| Myelencephalon | 7.18 ± 0.29 | |
| Occipital Lobe | 7.38 ± 0.36 | |
| Parietal Lobe | 7.29 ± 0.28 | |
| Pontine Tegmentum | 7.16 ± 0.31 | |
| Striatum | 7.08 ± 0.35 | |
| Subthalamus | 7.07 ± 0.11 | |
| Temporal Lobe | 7.1 ± 0.29 | |
| Thalamus | 7.27 ± 0.26 | |
| White Matter | 7.78 ± 0.34 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Chd6 | CB | Cerebellum | 55.59 | |
| 69.2 | | |||
| Chd6 | CTX | Cerebral cortex | 51.51 | |
| 38.59 | | |||
| Chd6 | HIP | Hippocampal region | 41.26 | |
| 48.27 | | |||
| Chd6 | HPF | Hippocampal formation | 49.27 | |
| 48.49 | | |||
| Chd6 | HY | Hypothalamus | 36.59 | |
| 27.8 | | |||
| Chd6 | LSX | Lateral septal complex | 59.15 | |
| 42.96 | | |||
| Chd6 | MB | Midbrain | 45.9 | |
| 39.9 | | |||
| Chd6 | MY | Medulla | 56.66 | |
| 63.25 | | |||
| Chd6 | OLF | Olfactory bulb | 66.3 | |
| 56.42 | | |||
| Chd6 | P | Pons | 57.31 | |
| 58.69 | | |||
| Chd6 | PAL | Pallidum | 37.76 | |
| 35.03 | | |||
| Chd6 | RHP | Retrohippocampal region | 65.77 | |
| 51.47 | | |||
| Chd6 | sAMY | Striatum-like amygdalar nuclei | 55 | |
| 39.41 | | |||
| Chd6 | STR | Striatum | 33.13 | |
| 24.25 | | |||
| Chd6 | STRd | Striatum dorsal region | 25.14 | |
| 18.44 | | |||
| Chd6 | STRv | Striatum ventral region | 31.61 | |
| 23.4 | | |||
| Chd6 | TH | Thalamus | 43.5 | |
| 36.65 | |