Annotation Detail for FAR1
Basic Information Top
| Gene Symbol: | FAR1 ( DKFZp686A0370,DKFZp686P18247,FLJ22728,FLJ33561,MLSTD2,SDR10E1 ) |
|---|---|
| Gene Full Name: | fatty acyl CoA reductase 1 |
| Band: | 11p15.3 |
| Quick Links | Entrez ID:84188; OMIM: NA; Uniprot ID:FACR1_HUMAN; ENSEMBL ID: ENSG00000197601; HGNC ID: 26222 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.501991
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 8 / 70761 | 113 |  |
| blastocyst | 7 / 62319 | 112 | |
| fetus | 36 / 564012 | 63 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 2 / 55556 | 35 |  |
| adult | 102 / 1939121 | 52 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 2 / 17475 | 114 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 6 / 82823 | 72 | |
| colorectal tumor | 4 / 114246 | 35 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 8 / 119369 | 67 | |
| germ cell tumor | 10 / 263845 | 37 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 9 / 136302 | 66 | |
| kidney tumor | 4 / 68959 | 58 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 4 / 96359 | 41 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 2 / 71755 | 27 | |
| non-neoplasia | 12 / 97250 | 123 | |
| normal | 203 / 3360307 | 60 | |
| ovarian tumor | 8 / 76682 | 104 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 3 / 125680 | 23 | |
| prostate cancer | 3 / 102680 | 29 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 9 / 124949 | 72 | |
| soft tissue/muscle tissue tumor | 5 / 125191 | 39 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 3 / 33197 | 90 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 3 / 29757 | 100 | |
| blood | 1 / 123478 | 8 |  |
| bone | 2 / 71655 | 27 | |
| bone marrow | 3 / 48801 | 61 | |
| brain | 61 / 1100989 | 55 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 10 / 149255 | 66 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 23 / 215722 | 106 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 6 / 211054 | 28 | |
| heart | 5 / 89626 | 55 | |
| intestine | 10 / 234472 | 42 | |
| kidney | 10 / 211777 | 47 | |
| larynx | 0 / 24145 | 0 | |
| liver | 9 / 207743 | 43 | |
| lung | 15 / 336974 | 44 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 10 / 91610 | 109 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 4 / 67052 | 59 | |
| muscle | 6 / 107715 | 55 | |
| nerve | 2 / 15768 | 126 | |
| ovary | 8 / 102051 | 78 | |
| pancreas | 16 / 214812 | 74 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 3 / 41328 | 72 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 12 / 280825 | 42 | |
| prostate | 8 / 189345 | 42 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 13 / 210574 | 61 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 14 / 96619 | 144 | |
| testis | 19 / 330442 | 57 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 14 / 232878 | 60 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_24_P163920
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 8.03 ± 0.24 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.83 ± 0.12 | |
| Basal Part of Pons | 7.92 ± 0.36 | |
| Cerebellar Cortex | 7.91 ± 0.24 | |
| Cerebellar Nuclei | 8.09 ± 0.28 | |
| Claustrum | 8.49 ± 0.37 | |
| Epithalamus | 7.69 ± 0.31 | |
| Frontal Lobe | 7.9 ± 0.35 | |
| Globus Pallidus | 8.53 ± 0.24 | |
| Hypothalamus | 7.71 ± 0.27 | |
| Insula | 7.84 ± 0.23 | |
| Limbic Lobe | 8.18 ± 0.36 | |
| Mesencephalon | 8.07 ± 0.44 | |
| Myelencephalon | 7.99 ± 0.38 | |
| Occipital Lobe | 8.36 ± 0.37 | |
| Parietal Lobe | 7.98 ± 0.37 | |
| Pontine Tegmentum | 8.08 ± 0.28 | |
| Striatum | 8.09 ± 0.39 | |
| Subthalamus | 7.91 ± 0.59 | |
| Temporal Lobe | 7.88 ± 0.28 | |
| Thalamus | 7.97 ± 0.29 | |
| White Matter | 9.75 ± 0.44 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Mlstd2 | CB | Cerebellum | 28.66 | |
| 24.64 | | |||
| Mlstd2 | CTX | Cerebral cortex | 100 | |
| 78.52 | | |||
| Mlstd2 | HIP | Hippocampal region | 58.92 | |
| 58.47 | | |||
| Mlstd2 | HPF | Hippocampal formation | 75.08 | |
| 56.07 | | |||
| Mlstd2 | HY | Hypothalamus | 59.65 | |
| 21.8 | | |||
| Mlstd2 | LSX | Lateral septal complex | 100 | |
| 44.62 | | |||
| Mlstd2 | MB | Midbrain | 53.62 | |
| 25.8 | | |||
| Mlstd2 | MY | Medulla | 69.4 | |
| 42.74 | | |||
| Mlstd2 | OLF | Olfactory bulb | 100 | |
| 53.42 | | |||
| Mlstd2 | P | Pons | 57.33 | |
| 31.72 | | |||
| Mlstd2 | PAL | Pallidum | 68.2 | |
| 29.98 | | |||
| Mlstd2 | RHP | Retrohippocampal region | 100 | |
| 56.09 | | |||
| Mlstd2 | sAMY | Striatum-like amygdalar nuclei | 100 | |
| 40.65 | | |||
| Mlstd2 | STR | Striatum | 100 | |
| 50.76 | | |||
| Mlstd2 | STRd | Striatum dorsal region | 100 | |
| 53.65 | | |||
| Mlstd2 | STRv | Striatum ventral region | 100 | |
| 50.47 | | |||
| Mlstd2 | TH | Thalamus | 66.86 | |
| 29.74 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00041222 | 20 | 176 | 195 | KLIDSLEWMDDGLVNDITPK | Peptide Atlas |