Annotation Detail for FAM96A
Basic Information Top
| Gene Symbol: | FAM96A ( FLJ22875 ) |
|---|---|
| Gene Full Name: | family with sequence similarity 96, member A |
| Band: | 15q22.31 |
| Quick Links | Entrez ID:84191; OMIM: NA; Uniprot ID:FA96A_HUMAN; ENSEMBL ID: ENSG00000166797; HGNC ID: 26235 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.439548
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 5 / 70761 | 70 |  |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 20 / 564012 | 35 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 5 / 55556 | 89 | |
| adult | 91 / 1939121 | 46 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 4 / 17475 | 228 |  |
| breast (mammary gland) tumor | 10 / 94178 | 106 | |
| cervical tumor | 3 / 34366 | 87 | |
| chondrosarcoma | 7 / 82823 | 84 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 7 / 119369 | 58 | |
| germ cell tumor | 8 / 263845 | 30 | |
| glioma | 11 / 106883 | 102 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 10 / 68959 | 145 | |
| leukemia | 12 / 95842 | 125 | |
| liver tumor | 4 / 96359 | 41 | |
| lung tumor | 1 / 103127 | 9 |  |
| lymphoma | 8 / 71755 | 111 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 163 / 3360307 | 48 | |
| ovarian tumor | 3 / 76682 | 39 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 3 / 46356 | 64 | |
| skin tumor | 9 / 124949 | 72 | |
| soft tissue/muscle tissue tumor | 19 / 125191 | 151 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 4 / 29757 | 134 | |
| blood | 6 / 123478 | 48 | |
| bone | 12 / 71655 | 167 | |
| bone marrow | 7 / 48801 | 143 | |
| brain | 38 / 1100989 | 34 | |
| cervix | 4 / 48171 | 83 | |
| connective tissue | 16 / 149255 | 107 | |
| ear | 1 / 16212 | 61 | |
| embryonic tissue | 12 / 215722 | 55 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 9 / 211054 | 42 | |
| heart | 6 / 89626 | 66 | |
| intestine | 13 / 234472 | 55 | |
| kidney | 21 / 211777 | 99 | |
| larynx | 0 / 24145 | 0 | |
| liver | 16 / 207743 | 77 | |
| lung | 20 / 336974 | 59 | |
| lymph | 3 / 44270 | 67 | |
| lymph node | 12 / 91610 | 130 | |
| mammary gland | 10 / 153271 | 65 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 5 / 107715 | 46 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 3 / 102051 | 29 | |
| pancreas | 26 / 214812 | 121 | |
| parathyroid | 4 / 20539 | 194 | |
| pharynx | 5 / 41328 | 120 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 10 / 280825 | 35 | |
| prostate | 8 / 189345 | 42 | |
| salivary gland | 7 / 20155 | 347 | |
| skin | 15 / 210574 | 71 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 8 / 96619 | 82 | |
| testis | 4 / 330442 | 12 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 3 / 52413 | 57 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 11 / 232878 | 47 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: CUST_285_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.4 ± 0.59 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.32 ± 0.42 | |
| Basal Part of Pons | 4.7 ± 0.54 | |
| Cerebellar Cortex | 4.78 ± 0.44 | |
| Cerebellar Nuclei | 4.99 ± 0.63 | |
| Claustrum | 3.93 ± 0.84 | |
| Epithalamus | 4.92 ± 0.39 | |
| Frontal Lobe | 4.86 ± 0.44 | |
| Globus Pallidus | 5.01 ± 0.18 | |
| Hypothalamus | 4.66 ± 0.6 | |
| Insula | 4.92 ± 0.45 | |
| Limbic Lobe | 4.4 ± 0.58 | |
| Mesencephalon | 4.79 ± 0.44 | |
| Myelencephalon | 4.67 ± 0.51 | |
| Occipital Lobe | 4.21 ± 0.48 | |
| Parietal Lobe | 4.6 ± 0.43 | |
| Pontine Tegmentum | 4.64 ± 0.58 | |
| Striatum | 4.69 ± 0.43 | |
| Subthalamus | 4.92 ± 0.44 | |
| Temporal Lobe | 4.76 ± 0.41 | |
| Thalamus | 4.79 ± 0.49 | |
| White Matter | 5.7 ± 0.43 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 5730536A07Rik | CB | Cerebellum | 3.58 | |
| 4.84 | | |||
| 5730536A07Rik | CTX | Cerebral cortex | 7.82 | |
| 6.58 | | |||
| 5730536A07Rik | HIP | Hippocampal region | 2.93 | |
| 2.9 | | |||
| 5730536A07Rik | HPF | Hippocampal formation | 2.29 | |
| 2.5 | | |||
| 5730536A07Rik | HY | Hypothalamus | 2.01 | |
| 2.08 | | |||
| 5730536A07Rik | LSX | Lateral septal complex | 2.28 | |
| 2.29 | | |||
| 5730536A07Rik | MB | Midbrain | 2.43 | |
| 3.07 | | |||
| 5730536A07Rik | MY | Medulla | 0.75 | |
| 0.99 | | |||
| 5730536A07Rik | OLF | Olfactory bulb | 4.09 | |
| 3.97 | | |||
| 5730536A07Rik | P | Pons | 1.18 | |
| 2.12 | | |||
| 5730536A07Rik | PAL | Pallidum | 1.81 | |
| 1.52 | | |||
| 5730536A07Rik | RHP | Retrohippocampal region | 1.09 | |
| 1.84 | | |||
| 5730536A07Rik | sAMY | Striatum-like amygdalar nuclei | 0.92 | |
| 1.08 | | |||
| 5730536A07Rik | STR | Striatum | 1.41 | |
| 1.31 | | |||
| 5730536A07Rik | STRd | Striatum dorsal region | 0.69 | |
| 0.8 | | |||
| 5730536A07Rik | STRv | Striatum ventral region | 4.37 | |
| 2.92 | | |||
| 5730536A07Rik | TH | Thalamus | 1.48 | |
| 1.32 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| FA96A_HUMAN_139 | 11 | 139 | 149 | VAAAMENPNLR | PRIDE |