Annotation Detail for TRAF7
Basic Information Top
| Gene Symbol: | TRAF7 ( DKFZp586I021,MGC7807,RFWD1,RNF119 ) |
|---|---|
| Gene Full Name: | TNF receptor-associated factor 7 |
| Band: | 16p13.3 |
| Quick Links | Entrez ID:84231; OMIM: 606692; Uniprot ID:TRAF7_HUMAN; ENSEMBL ID: ENSG00000131653; HGNC ID: 20456 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.713632
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 11 / 70761 | 155 |  |
| blastocyst | 5 / 62319 | 80 | |
| fetus | 36 / 564012 | 63 | |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 |  |
| juvenile | 1 / 55556 | 17 | |
| adult | 175 / 1939121 | 90 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 16 / 94178 | 169 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 22 / 82823 | 265 |  |
| colorectal tumor | 13 / 114246 | 113 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 14 / 119369 | 117 | |
| germ cell tumor | 13 / 263845 | 49 | |
| glioma | 26 / 106883 | 243 | |
| head and neck tumor | 8 / 136302 | 58 | |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 5 / 95842 | 52 | |
| liver tumor | 9 / 96359 | 93 | |
| lung tumor | 26 / 103127 | 252 | |
| lymphoma | 42 / 71755 | 585 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 174 / 3360307 | 51 | |
| ovarian tumor | 17 / 76682 | 221 | |
| pancreatic tumor | 9 / 104616 | 86 | |
| primitive neuroectodermal tumor of the CNS | 17 / 125680 | 135 | |
| prostate cancer | 28 / 102680 | 272 | |
| retinoblastoma | 7 / 46356 | 151 | |
| skin tumor | 11 / 124949 | 88 | |
| soft tissue/muscle tissue tumor | 6 / 125191 | 47 | |
| uterine tumor | 10 / 90257 | 110 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 6 / 40015 | 149 | |
| bladder | 1 / 29757 | 33 | |
| blood | 7 / 123478 | 56 | |
| bone | 13 / 71655 | 181 | |
| bone marrow | 5 / 48801 | 102 | |
| brain | 67 / 1100989 | 60 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 8 / 149255 | 53 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 23 / 215722 | 106 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 26 / 211054 | 123 | |
| heart | 4 / 89626 | 44 | |
| intestine | 25 / 234472 | 106 | |
| kidney | 7 / 211777 | 33 | |
| larynx | 0 / 24145 | 0 | |
| liver | 10 / 207743 | 48 | |
| lung | 54 / 336974 | 160 | |
| lymph | 42 / 44270 | 948 | |
| lymph node | 6 / 91610 | 65 | |
| mammary gland | 16 / 153271 | 104 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 6 / 107715 | 55 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 18 / 102051 | 176 | |
| pancreas | 22 / 214812 | 102 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 12 / 280825 | 42 | |
| prostate | 33 / 189345 | 174 | |
| salivary gland | 2 / 20155 | 99 | |
| skin | 18 / 210574 | 85 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 7 / 96619 | 72 | |
| testis | 8 / 330442 | 24 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 4 / 47473 | 84 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 18 / 232878 | 77 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P206474
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.1 ± 0.48 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.12 ± 0.22 | |
| Basal Part of Pons | 4.01 ± 0.45 | |
| Cerebellar Cortex | 4.05 ± 0.37 | |
| Cerebellar Nuclei | 3.33 ± 0.37 | |
| Claustrum | 4.02 ± 0.68 | |
| Epithalamus | 4.1 ± 0.56 | |
| Frontal Lobe | 4.06 ± 0.48 | |
| Globus Pallidus | 3.64 ± 0.77 | |
| Hypothalamus | 3.73 ± 0.54 | |
| Insula | 4.17 ± 0.61 | |
| Limbic Lobe | 4.44 ± 0.4 | |
| Mesencephalon | 4.06 ± 0.51 | |
| Myelencephalon | 4.14 ± 0.5 | |
| Occipital Lobe | 4.4 ± 0.43 | |
| Parietal Lobe | 4.25 ± 0.37 | |
| Pontine Tegmentum | 4.08 ± 0.49 | |
| Striatum | 4.13 ± 0.51 | |
| Subthalamus | 3.92 ± 0.4 | |
| Temporal Lobe | 4.13 ± 0.46 | |
| Thalamus | 4 ± 0.46 | |
| White Matter | 2.88 ± 0.7 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Traf7 | CB | Cerebellum | 41.38 | |
| 32.48 | | |||
| Traf7 | CTX | Cerebral cortex | 51.35 | |
| 38.65 | | |||
| Traf7 | HIP | Hippocampal region | 46.71 | |
| 43.92 | | |||
| Traf7 | HPF | Hippocampal formation | 56.38 | |
| 47.29 | | |||
| Traf7 | HY | Hypothalamus | 51.06 | |
| 25.05 | | |||
| Traf7 | LSX | Lateral septal complex | 50.07 | |
| 41.45 | | |||
| Traf7 | MB | Midbrain | 50.41 | |
| 31.76 | | |||
| Traf7 | MY | Medulla | 49.6 | |
| 40.88 | | |||
| Traf7 | OLF | Olfactory bulb | 54.49 | |
| 42.68 | | |||
| Traf7 | P | Pons | 53 | |
| 47.76 | | |||
| Traf7 | PAL | Pallidum | 50.38 | |
| 29.46 | | |||
| Traf7 | RHP | Retrohippocampal region | 52.51 | |
| 49.5 | | |||
| Traf7 | sAMY | Striatum-like amygdalar nuclei | 51.16 | |
| 24.57 | | |||
| Traf7 | STR | Striatum | 50.45 | |
| 24.23 | | |||
| Traf7 | STRd | Striatum dorsal region | 42.39 | |
| 18 | | |||
| Traf7 | STRv | Striatum ventral region | 50.48 | |
| 38.12 | | |||
| Traf7 | TH | Thalamus | 29.66 | |
| 15.2 | |