Annotation Detail for LDOC1L
Basic Information Top
| Gene Symbol: | LDOC1L ( DKFZp761O17121,Mar6,Mart6,dJ1033E15.2 ) |
|---|---|
| Gene Full Name: | leucine zipper, down-regulated in cancer 1-like |
| Band: | 22q13.31 |
| Quick Links | Entrez ID:84247; OMIM: NA; Uniprot ID:LDOCL_HUMAN; ENSEMBL ID: ENSG00000188636; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.706701
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 7 / 62319 | 112 | |
| fetus | 40 / 564012 | 70 | |
| neonate | 1 / 31097 | 32 |  |
| infant | 1 / 23620 | 42 | |
| juvenile | 3 / 55556 | 53 | |
| adult | 66 / 1939121 | 34 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 6 / 82823 | 72 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 6 / 263845 | 22 | |
| glioma | 7 / 106883 | 65 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 7 / 68959 | 101 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 3 / 96359 | 31 | |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 5 / 97250 | 51 | |
| normal | 163 / 3360307 | 48 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 8 / 125680 | 63 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 3 / 46356 | 64 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 10 / 125191 | 79 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 1 / 123478 | 8 | |
| bone | 6 / 71655 | 83 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 98 / 1100989 | 89 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 3 / 16212 | 185 | |
| embryonic tissue | 13 / 215722 | 60 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 9 / 211054 | 42 | |
| heart | 3 / 89626 | 33 | |
| intestine | 6 / 234472 | 25 | |
| kidney | 10 / 211777 | 47 | |
| larynx | 0 / 24145 | 0 | |
| liver | 4 / 207743 | 19 | |
| lung | 15 / 336974 | 44 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 9 / 153271 | 58 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 6 / 214812 | 27 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 1 / 280825 | 3 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 8 / 210574 | 37 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 0 / 96619 | 0 | |
| testis | 15 / 330442 | 45 | |
| thymus | 6 / 81131 | 73 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 7 / 52413 | 133 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 22 / 232878 | 94 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: A_24_P96474
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.64 ± 0.26 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.85 ± 0.17 | |
| Basal Part of Pons | 7.89 ± 0.34 | |
| Cerebellar Cortex | 7.81 ± 0.23 | |
| Cerebellar Nuclei | 7.53 ± 0.35 | |
| Claustrum | 7.53 ± 0.57 | |
| Epithalamus | 7.75 ± 0.22 | |
| Frontal Lobe | 7.87 ± 0.29 | |
| Globus Pallidus | 7.57 ± 0.21 | |
| Hypothalamus | 7.85 ± 0.37 | |
| Insula | 7.98 ± 0.3 | |
| Limbic Lobe | 7.62 ± 0.42 | |
| Mesencephalon | 7.76 ± 0.4 | |
| Myelencephalon | 7.7 ± 0.38 | |
| Occipital Lobe | 7.38 ± 0.47 | |
| Parietal Lobe | 7.75 ± 0.31 | |
| Pontine Tegmentum | 7.66 ± 0.32 | |
| Striatum | 7.2 ± 0.28 | |
| Subthalamus | 7.73 ± 0.18 | |
| Temporal Lobe | 7.92 ± 0.29 | |
| Thalamus | 7.67 ± 0.29 | |
| White Matter | 7.2 ± 0.29 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Ldoc1l | CB | Cerebellum | 10.66 | |
| 12.97 | | |||
| Ldoc1l | CTX | Cerebral cortex | 30.02 | |
| 20.27 | | |||
| Ldoc1l | HIP | Hippocampal region | 19.82 | |
| 20.55 | | |||
| Ldoc1l | HPF | Hippocampal formation | 19.52 | |
| 17.8 | | |||
| Ldoc1l | HY | Hypothalamus | 6.01 | |
| 4.27 | | |||
| Ldoc1l | LSX | Lateral septal complex | 11.19 | |
| 7.74 | | |||
| Ldoc1l | MB | Midbrain | 7.99 | |
| 7.18 | | |||
| Ldoc1l | MY | Medulla | 4.89 | |
| 5.06 | | |||
| Ldoc1l | OLF | Olfactory bulb | 31.16 | |
| 23.55 | | |||
| Ldoc1l | P | Pons | 6.31 | |
| 5.52 | | |||
| Ldoc1l | PAL | Pallidum | 6.48 | |
| 5.06 | | |||
| Ldoc1l | RHP | Retrohippocampal region | 19.24 | |
| 14.1 | | |||
| Ldoc1l | sAMY | Striatum-like amygdalar nuclei | 14.04 | |
| 9.59 | | |||
| Ldoc1l | STR | Striatum | 12.98 | |
| 8.69 | | |||
| Ldoc1l | STRd | Striatum dorsal region | 13.11 | |
| 8.82 | | |||
| Ldoc1l | STRv | Striatum ventral region | 12.23 | |
| 7.83 | | |||
| Ldoc1l | TH | Thalamus | 12.01 | |
| 9.24 | |