Annotation Detail for PHF6
Basic Information Top
| Gene Symbol: | PHF6 ( BORJ,MGC14797 ) |
|---|---|
| Gene Full Name: | PHD finger protein 6 |
| Band: | Xq26.2 |
| Quick Links | Entrez ID:84295; OMIM: 300414; Uniprot ID:PHF6_HUMAN; ENSEMBL ID: ENSG00000156531; HGNC ID: 18145 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.356501
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 6 / 62319 | 96 |  |
| fetus | 15 / 564012 | 26 | |
| neonate | 1 / 31097 | 32 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 60 / 1939121 | 30 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 4 / 17475 | 228 |  |
| breast (mammary gland) tumor | 5 / 94178 | 53 | |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 10 / 119369 | 83 | |
| germ cell tumor | 27 / 263845 | 102 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 12 / 95842 | 125 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 107 / 3360307 | 31 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 6 / 104616 | 57 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 5 / 102680 | 48 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 5 / 124949 | 40 | |
| soft tissue/muscle tissue tumor | 10 / 125191 | 79 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 4 / 29757 | 134 | |
| blood | 3 / 123478 | 24 | |
| bone | 4 / 71655 | 55 | |
| bone marrow | 6 / 48801 | 122 | |
| brain | 37 / 1100989 | 33 | |
| cervix | 5 / 48171 | 103 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 1 / 16212 | 61 | |
| embryonic tissue | 10 / 215722 | 46 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 3 / 211054 | 14 | |
| heart | 1 / 89626 | 11 | |
| intestine | 10 / 234472 | 42 | |
| kidney | 7 / 211777 | 33 | |
| larynx | 0 / 24145 | 0 | |
| liver | 8 / 207743 | 38 | |
| lung | 10 / 336974 | 29 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 25 / 91610 | 272 | |
| mammary gland | 6 / 153271 | 39 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 8 / 214812 | 37 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 2 / 16585 | 120 | |
| placenta | 5 / 280825 | 17 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 6 / 210574 | 28 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 2 / 96619 | 20 | |
| testis | 23 / 330442 | 69 | |
| thymus | 9 / 81131 | 110 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 1 / 16999 | 58 | |
| trachea | 5 / 52413 | 95 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 21 / 232878 | 90 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: CUST_10139_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.13 ± 0.27 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.87 ± 0.36 | |
| Basal Part of Pons | 6.95 ± 0.2 | |
| Cerebellar Cortex | 7.17 ± 0.26 | |
| Cerebellar Nuclei | 7.27 ± 0.29 | |
| Claustrum | 6.85 ± 0.49 | |
| Epithalamus | 7.09 ± 0.2 | |
| Frontal Lobe | 7.11 ± 0.32 | |
| Globus Pallidus | 7.27 ± 0.2 | |
| Hypothalamus | 7.33 ± 0.25 | |
| Insula | 7.17 ± 0.33 | |
| Limbic Lobe | 6.89 ± 0.4 | |
| Mesencephalon | 7.11 ± 0.3 | |
| Myelencephalon | 6.95 ± 0.4 | |
| Occipital Lobe | 6.93 ± 0.32 | |
| Parietal Lobe | 7.11 ± 0.31 | |
| Pontine Tegmentum | 7.13 ± 0.38 | |
| Striatum | 6.65 ± 0.39 | |
| Subthalamus | 7.57 ± 0.24 | |
| Temporal Lobe | 7.01 ± 0.28 | |
| Thalamus | 6.96 ± 0.33 | |
| White Matter | 8.24 ± 0.09 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Phf6 | CB | Cerebellum | 4.04 | |
| 3.53 | | |||
| Phf6 | CTX | Cerebral cortex | 3.13 | |
| 2.15 | | |||
| Phf6 | HIP | Hippocampal region | 8.3 | |
| 7.48 | | |||
| Phf6 | HPF | Hippocampal formation | 6.83 | |
| 5.76 | | |||
| Phf6 | HY | Hypothalamus | 1.1 | |
| 0.99 | | |||
| Phf6 | LSX | Lateral septal complex | 3.05 | |
| 2.55 | | |||
| Phf6 | MB | Midbrain | 1.62 | |
| 1.5 | | |||
| Phf6 | MY | Medulla | 3.32 | |
| 3.95 | | |||
| Phf6 | OLF | Olfactory bulb | 11.96 | |
| 9.38 | | |||
| Phf6 | P | Pons | 1.56 | |
| 1.84 | | |||
| Phf6 | PAL | Pallidum | 2.93 | |
| 2.84 | | |||
| Phf6 | RHP | Retrohippocampal region | 4.88 | |
| 3.74 | | |||
| Phf6 | sAMY | Striatum-like amygdalar nuclei | 1.47 | |
| 1.38 | | |||
| Phf6 | STR | Striatum | 1.47 | |
| 1.34 | | |||
| Phf6 | STRd | Striatum dorsal region | 0.8 | |
| 0.87 | | |||
| Phf6 | STRv | Striatum ventral region | 2.84 | |
| 1.99 | | |||
| Phf6 | TH | Thalamus | 1.46 | |
| 1.24 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00001007 | 14 | 212 | 225 | CGFCHVGEEENEAR | Peptide Atlas |
| PHF6_HUMAN_188 | 9 | 188 | 196 | DEMESSSYR | PRIDE |
| PHF6_HUMAN_2 | 12 | 2 | 13 | SSSVEQKKGPTR | PRIDE |