Annotation Detail for C7orf50
Basic Information Top
| Gene Symbol: | C7orf50 ( MGC11257,YCR016W ) |
|---|---|
| Gene Full Name: | chromosome 7 open reading frame 50 |
| Band: | 7p22.3 |
| Quick Links | Entrez ID:84310; OMIM: NA; Uniprot ID:CG050_HUMAN; ENSEMBL ID: ENSG00000146540; HGNC ID: 22421 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.653258
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 3 / 62319 | 48 |  |
| fetus | 16 / 564012 | 28 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 123 / 1939121 | 63 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 8 / 94178 | 84 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 8 / 82823 | 96 | |
| colorectal tumor | 5 / 114246 | 43 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 32 / 119369 | 268 |  |
| germ cell tumor | 20 / 263845 | 75 | |
| glioma | 27 / 106883 | 252 | |
| head and neck tumor | 12 / 136302 | 88 | |
| kidney tumor | 4 / 68959 | 58 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 7 / 96359 | 72 | |
| lung tumor | 26 / 103127 | 252 | |
| lymphoma | 7 / 71755 | 97 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 159 / 3360307 | 47 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 23 / 104616 | 219 | |
| primitive neuroectodermal tumor of the CNS | 11 / 125680 | 87 | |
| prostate cancer | 6 / 102680 | 58 | |
| retinoblastoma | 4 / 46356 | 86 | |
| skin tumor | 19 / 124949 | 152 | |
| soft tissue/muscle tissue tumor | 6 / 125191 | 47 | |
| uterine tumor | 6 / 90257 | 66 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 9 / 40015 | 224 | |
| bladder | 0 / 29757 | 0 | |
| blood | 4 / 123478 | 32 | |
| bone | 7 / 71655 | 97 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 74 / 1100989 | 67 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 19 / 215722 | 88 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 22 / 211054 | 104 | |
| heart | 3 / 89626 | 33 | |
| intestine | 11 / 234472 | 46 | |
| kidney | 12 / 211777 | 56 | |
| larynx | 1 / 24145 | 41 | |
| liver | 10 / 207743 | 48 | |
| lung | 33 / 336974 | 97 | |
| lymph | 3 / 44270 | 67 | |
| lymph node | 4 / 91610 | 43 | |
| mammary gland | 9 / 153271 | 58 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 1 / 107715 | 9 |  |
| nerve | 0 / 15768 | 0 | |
| ovary | 10 / 102051 | 97 | |
| pancreas | 29 / 214812 | 135 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 12 / 280825 | 42 | |
| prostate | 24 / 189345 | 126 | |
| salivary gland | 10 / 20155 | 496 | |
| skin | 24 / 210574 | 113 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 22 / 96619 | 227 | |
| testis | 2 / 330442 | 6 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 2 / 16999 | 117 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 11 / 232878 | 47 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: A_23_P134477
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 8.37 ± 0.45 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 8.09 ± 0.22 | |
| Basal Part of Pons | 8.25 ± 0.27 | |
| Cerebellar Cortex | 8.01 ± 0.2 | |
| Cerebellar Nuclei | 7.98 ± 0.33 | |
| Claustrum | 8.13 ± 0.38 | |
| Epithalamus | 8.24 ± 0.39 | |
| Frontal Lobe | 8.28 ± 0.29 | |
| Globus Pallidus | 8.09 ± 0.4 | |
| Hypothalamus | 8.13 ± 0.25 | |
| Insula | 8.29 ± 0.23 | |
| Limbic Lobe | 8.25 ± 0.28 | |
| Mesencephalon | 8.13 ± 0.3 | |
| Myelencephalon | 8.22 ± 0.29 | |
| Occipital Lobe | 7.94 ± 0.23 | |
| Parietal Lobe | 8.23 ± 0.29 | |
| Pontine Tegmentum | 8.12 ± 0.28 | |
| Striatum | 8.03 ± 0.33 | |
| Subthalamus | 7.98 ± 0.34 | |
| Temporal Lobe | 8.37 ± 0.27 | |
| Thalamus | 8.11 ± 0.21 | |
| White Matter | 7.53 ± 0.16 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 3110082I17Rik | CB | Cerebellum | 2.05 | |
| 2.86 | | |||
| 3110082I17Rik | CTX | Cerebral cortex | 1.37 | |
| 1.38 | | |||
| 3110082I17Rik | HIP | Hippocampal region | 1.03 | |
| 1.05 | | |||
| 3110082I17Rik | HPF | Hippocampal formation | 1.31 | |
| 1.27 | | |||
| 3110082I17Rik | HY | Hypothalamus | 0.16 | |
| 0.25 | | |||
| 3110082I17Rik | LSX | Lateral septal complex | 0.2 | |
| 0.19 | | |||
| 3110082I17Rik | MB | Midbrain | 0.68 | |
| 0.97 | | |||
| 3110082I17Rik | MY | Medulla | 2.15 | |
| 2.44 | | |||
| 3110082I17Rik | OLF | Olfactory bulb | 0.97 | |
| 0.58 | | |||
| 3110082I17Rik | P | Pons | 0.79 | |
| 0.91 | | |||
| 3110082I17Rik | PAL | Pallidum | 0.95 | |
| 0.79 | | |||
| 3110082I17Rik | RHP | Retrohippocampal region | 1.78 | |
| 1.57 | | |||
| 3110082I17Rik | sAMY | Striatum-like amygdalar nuclei | 0.69 | |
| 0.58 | | |||
| 3110082I17Rik | STR | Striatum | 0.5 | |
| 0.36 | | |||
| 3110082I17Rik | STRd | Striatum dorsal region | 0.58 | |
| 0.41 | | |||
| 3110082I17Rik | STRv | Striatum ventral region | 0.17 | |
| 0.12 | | |||
| 3110082I17Rik | TH | Thalamus | 1.13 | |
| 1.22 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00132753 | 12 | 84 | 95 | EAGLVAQHPPAR | Peptide Atlas |