Annotation Detail for VPS25
Basic Information Top
| Gene Symbol: | VPS25 ( DERP9,EAP20,FAP20,MGC10540 ) |
|---|---|
| Gene Full Name: | vacuolar protein sorting 25 homolog (S. cerevisiae) |
| Band: | 17q21.31 |
| Quick Links | Entrez ID:84313; OMIM: 610907; Uniprot ID:VPS25_HUMAN; ENSEMBL ID: ENSG00000131475; HGNC ID: 28122 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.500165
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 15 / 70761 | 211 |  |
| blastocyst | 6 / 62319 | 96 |  |
| fetus | 34 / 564012 | 60 | |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 |  |
| juvenile | 0 / 55556 | 0 | |
| adult | 114 / 1939121 | 58 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 2 / 17475 | 114 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 3 / 34366 | 87 | |
| chondrosarcoma | 12 / 82823 | 144 | |
| colorectal tumor | 6 / 114246 | 52 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 7 / 119369 | 58 | |
| germ cell tumor | 6 / 263845 | 22 | |
| glioma | 12 / 106883 | 112 | |
| head and neck tumor | 10 / 136302 | 73 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 14 / 96359 | 145 | |
| lung tumor | 9 / 103127 | 87 | |
| lymphoma | 7 / 71755 | 97 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 193 / 3360307 | 57 | |
| ovarian tumor | 9 / 76682 | 117 | |
| pancreatic tumor | 6 / 104616 | 57 | |
| primitive neuroectodermal tumor of the CNS | 11 / 125680 | 87 | |
| prostate cancer | 11 / 102680 | 107 | |
| retinoblastoma | 3 / 46356 | 64 | |
| skin tumor | 12 / 124949 | 96 | |
| soft tissue/muscle tissue tumor | 4 / 125191 | 31 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 3 / 33197 | 90 | |
| ascites | 3 / 40015 | 74 | |
| bladder | 2 / 29757 | 67 | |
| blood | 7 / 123478 | 56 | |
| bone | 11 / 71655 | 153 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 46 / 1100989 | 41 | |
| cervix | 5 / 48171 | 103 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 26 / 215722 | 120 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 20 / 211054 | 94 | |
| heart | 6 / 89626 | 66 | |
| intestine | 13 / 234472 | 55 | |
| kidney | 15 / 211777 | 70 | |
| larynx | 1 / 24145 | 41 | |
| liver | 19 / 207743 | 91 | |
| lung | 25 / 336974 | 74 | |
| lymph | 4 / 44270 | 90 | |
| lymph node | 4 / 91610 | 43 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 10 / 102051 | 97 | |
| pancreas | 15 / 214812 | 69 | |
| parathyroid | 3 / 20539 | 146 | |
| pharynx | 7 / 41328 | 169 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 14 / 280825 | 49 | |
| prostate | 16 / 189345 | 84 | |
| salivary gland | 6 / 20155 | 297 | |
| skin | 21 / 210574 | 99 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 7 / 96619 | 72 | |
| testis | 9 / 330442 | 27 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 13 / 232878 | 55 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: CUST_4900_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.39 ± 0.47 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.93 ± 0.39 | |
| Basal Part of Pons | 5.11 ± 0.47 | |
| Cerebellar Cortex | 4.83 ± 0.42 | |
| Cerebellar Nuclei | 4.87 ± 0.36 | |
| Claustrum | 5.59 ± 0.5 | |
| Epithalamus | 4.79 ± 0.13 | |
| Frontal Lobe | 5.06 ± 0.43 | |
| Globus Pallidus | 5.06 ± 0.28 | |
| Hypothalamus | 4.74 ± 0.5 | |
| Insula | 5.04 ± 0.23 | |
| Limbic Lobe | 5.06 ± 0.47 | |
| Mesencephalon | 4.98 ± 0.44 | |
| Myelencephalon | 4.93 ± 0.44 | |
| Occipital Lobe | 4.71 ± 0.38 | |
| Parietal Lobe | 4.94 ± 0.49 | |
| Pontine Tegmentum | 5.01 ± 0.41 | |
| Striatum | 4.9 ± 0.47 | |
| Subthalamus | 3.94 ± 0.56 | |
| Temporal Lobe | 5 ± 0.37 | |
| Thalamus | 4.94 ± 0.37 | |
| White Matter | 5.06 ± 0.09 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Vps25 | CB | Cerebellum | 46.92 | |
| 89.79 | | |||
| Vps25 | CTX | Cerebral cortex | 79.52 | |
| 63.64 | | |||
| Vps25 | HIP | Hippocampal region | 62.01 | |
| 98.96 | | |||
| Vps25 | HPF | Hippocampal formation | 71.48 | |
| 87.04 | | |||
| Vps25 | HY | Hypothalamus | 23.56 | |
| 19.22 | | |||
| Vps25 | LSX | Lateral septal complex | 38.22 | |
| 28.62 | | |||
| Vps25 | MB | Midbrain | 38.54 | |
| 38.51 | | |||
| Vps25 | MY | Medulla | 42.3 | |
| 53.74 | | |||
| Vps25 | OLF | Olfactory bulb | 70.12 | |
| 62.63 | | |||
| Vps25 | P | Pons | 34.78 | |
| 44.35 | | |||
| Vps25 | PAL | Pallidum | 28.27 | |
| 26.97 | | |||
| Vps25 | RHP | Retrohippocampal region | 86.36 | |
| 75.64 | | |||
| Vps25 | sAMY | Striatum-like amygdalar nuclei | 42.46 | |
| 31.16 | | |||
| Vps25 | STR | Striatum | 61.97 | |
| 47.62 | | |||
| Vps25 | STRd | Striatum dorsal region | 66.54 | |
| 52.28 | | |||
| Vps25 | STRv | Striatum ventral region | 61.4 | |
| 44.17 | | |||
| Vps25 | TH | Thalamus | 51.66 | |
| 51.22 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00063687 | 10 | 152 | 161 | ALQALQQEHK | Peptide Atlas |
| VPS25_HUMAN_109 | 8 | 109 | 116 | LIYQWVSR | PRIDE |
| VPS25_HUMAN_12 | 14 | 12 | 25 | FPPFFTLQPNVDTR | PRIDE |
| VPS25_HUMAN_151 | 20 | 151 | 170 | ALQALQQEHKAEIITVSDGR | PRIDE |
| VPS25_HUMAN_67 | 15 | 67 | 81 | KLPVESIQIVLEELR | PRIDE |
| VPS25_HUMAN_67 | 16 | 67 | 82 | KLPVESIQIVLEELRK | PRIDE |
| VPS25_HUMAN_94 | 8 | 94 | 101 | SSFLIMWR | PRIDE |