Annotation Detail for CCDC77
Basic Information Top
| Gene Symbol: | CCDC77 ( MGC13183 ) |
|---|---|
| Gene Full Name: | coiled-coil domain containing 77 |
| Band: | 12p13.33 |
| Quick Links | Entrez ID:84318; OMIM: NA; Uniprot ID:CCD77_HUMAN; ENSEMBL ID: ENSG00000120647; HGNC ID: 28203 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.631656
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 5 / 70761 | 70 |  |
| blastocyst | 3 / 62319 | 48 |  |
| fetus | 10 / 564012 | 17 | |
| neonate | 1 / 31097 | 32 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 28 / 1939121 | 14 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 17 / 263845 | 64 | |
| glioma | 1 / 106883 | 9 |  |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 4 / 95842 | 41 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 48 / 3360307 | 14 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 8 / 125680 | 63 | |
| prostate cancer | 3 / 102680 | 29 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 6 / 124949 | 48 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 6 / 123478 | 48 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 21 / 1100989 | 19 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 13 / 215722 | 60 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 0 / 211054 | 0 | |
| heart | 2 / 89626 | 22 | |
| intestine | 3 / 234472 | 12 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 4 / 336974 | 11 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 3 / 102051 | 29 | |
| pancreas | 2 / 214812 | 9 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 2 / 280825 | 7 | |
| prostate | 3 / 189345 | 15 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 7 / 210574 | 33 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 0 / 96619 | 0 | |
| testis | 9 / 330442 | 27 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 5 / 232878 | 21 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: A_23_P99172
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.99 ± 0.51 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.44 ± 0.28 | |
| Basal Part of Pons | 6.41 ± 0.35 | |
| Cerebellar Cortex | 6.09 ± 0.17 | |
| Cerebellar Nuclei | 6.59 ± 0.18 | |
| Claustrum | 5.74 ± 0.67 | |
| Epithalamus | 6.48 ± 0.53 | |
| Frontal Lobe | 6.32 ± 0.41 | |
| Globus Pallidus | 6.97 ± 0.21 | |
| Hypothalamus | 6.26 ± 0.37 | |
| Insula | 6.34 ± 0.31 | |
| Limbic Lobe | 6.32 ± 0.52 | |
| Mesencephalon | 6.2 ± 0.56 | |
| Myelencephalon | 6.23 ± 0.43 | |
| Occipital Lobe | 6.02 ± 0.39 | |
| Parietal Lobe | 6.14 ± 0.36 | |
| Pontine Tegmentum | 6.35 ± 0.35 | |
| Striatum | 6.71 ± 0.38 | |
| Subthalamus | 6.49 ± 0.14 | |
| Temporal Lobe | 6.27 ± 0.38 | |
| Thalamus | 6.16 ± 0.35 | |
| White Matter | 7.8 ± 0.22 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Ccdc77 | CB | Cerebellum | 6.37 | |
| 6.88 | | |||
| Ccdc77 | CTX | Cerebral cortex | 5.74 | |
| 4.17 | | |||
| Ccdc77 | HIP | Hippocampal region | 9.72 | |
| 8.94 | | |||
| Ccdc77 | HPF | Hippocampal formation | 10.07 | |
| 8.75 | | |||
| Ccdc77 | HY | Hypothalamus | 5.52 | |
| 5.18 | | |||
| Ccdc77 | LSX | Lateral septal complex | 0.84 | |
| 0.86 | | |||
| Ccdc77 | MB | Midbrain | 5.01 | |
| 5.17 | | |||
| Ccdc77 | MY | Medulla | 9.33 | |
| 12.54 | | |||
| Ccdc77 | OLF | Olfactory bulb | 19.13 | |
| 14.56 | | |||
| Ccdc77 | P | Pons | 12.43 | |
| 15.42 | | |||
| Ccdc77 | PAL | Pallidum | 3.22 | |
| 2.67 | | |||
| Ccdc77 | RHP | Retrohippocampal region | 11.18 | |
| 9.03 | | |||
| Ccdc77 | sAMY | Striatum-like amygdalar nuclei | 4.49 | |
| 2.8 | | |||
| Ccdc77 | STR | Striatum | 4.04 | |
| 2.99 | | |||
| Ccdc77 | STRd | Striatum dorsal region | 3.03 | |
| 2.38 | | |||
| Ccdc77 | STRv | Striatum ventral region | 9.66 | |
| 6.4 | | |||
| Ccdc77 | TH | Thalamus | 3.88 | |
| 3.26 | |