Annotation Detail for HVCN1
Basic Information Top
| Gene Symbol: | HVCN1 ( HV1,MGC15619,VSOP ) |
|---|---|
| Gene Full Name: | hydrogen voltage-gated channel 1 |
| Band: | 12q24.11 |
| Quick Links | Entrez ID:84329; OMIM: 611227; Uniprot ID:HVCN1_HUMAN; ENSEMBL ID: ENSG00000122986; HGNC ID: 28240 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.334637
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 10 / 564012 | 17 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 27 / 1939121 | 13 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 3 / 263845 | 11 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 7 / 95842 | 73 |  |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 12 / 103127 | 116 | |
| lymphoma | 8 / 71755 | 111 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 90 / 3360307 | 26 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 |  |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 7 / 123478 | 56 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 20 / 1100989 | 18 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 5 / 215722 | 23 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 2 / 211054 | 9 | |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 2 / 24145 | 82 | |
| liver | 1 / 207743 | 4 | |
| lung | 13 / 336974 | 38 | |
| lymph | 4 / 44270 | 90 | |
| lymph node | 12 / 91610 | 130 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 3 / 280825 | 10 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 6 / 53952 | 111 | |
| stomach | 0 / 96619 | 0 | |
| testis | 22 / 330442 | 66 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 7 / 16999 | 411 |  |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 2 / 232878 | 8 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_15098_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.25 ± 0.55 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.96 ± 0.34 | |
| Basal Part of Pons | 3.98 ± 0.39 | |
| Cerebellar Cortex | 4.46 ± 0.56 | |
| Cerebellar Nuclei | 5.21 ± 0.79 | |
| Claustrum | 3.97 ± 0.77 | |
| Epithalamus | 5.89 ± 0.53 | |
| Frontal Lobe | 4.6 ± 0.63 | |
| Globus Pallidus | 7.37 ± 0.59 | |
| Hypothalamus | 5.23 ± 0.64 | |
| Insula | 4.42 ± 0.73 | |
| Limbic Lobe | 4.3 ± 0.82 | |
| Mesencephalon | 5.34 ± 0.63 | |
| Myelencephalon | 4.8 ± 0.73 | |
| Occipital Lobe | 4.89 ± 1.11 | |
| Parietal Lobe | 4.67 ± 0.72 | |
| Pontine Tegmentum | 4.73 ± 0.51 | |
| Striatum | 5.38 ± 0.85 | |
| Subthalamus | 5.31 ± 0.5 | |
| Temporal Lobe | 4.28 ± 0.58 | |
| Thalamus | 5.15 ± 0.47 | |
| White Matter | 5.88 ± 0.65 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Hvcn1 | CB | Cerebellum | 2.49 | |
| 2.76 | | |||
| Hvcn1 | CTX | Cerebral cortex | 2.13 | |
| 1.69 | | |||
| Hvcn1 | HIP | Hippocampal region | 1.46 | |
| 1.19 | | |||
| Hvcn1 | HPF | Hippocampal formation | 1.29 | |
| 1 | | |||
| Hvcn1 | HY | Hypothalamus | 2.05 | |
| 1.12 | | |||
| Hvcn1 | LSX | Lateral septal complex | 1.68 | |
| 1.06 | | |||
| Hvcn1 | MB | Midbrain | 3 | |
| 2.18 | | |||
| Hvcn1 | MY | Medulla | 3.59 | |
| 3.07 | | |||
| Hvcn1 | OLF | Olfactory bulb | 2.33 | |
| 1.57 | | |||
| Hvcn1 | P | Pons | 3.32 | |
| 2.57 | | |||
| Hvcn1 | PAL | Pallidum | 0.8 | |
| 0.69 | | |||
| Hvcn1 | RHP | Retrohippocampal region | 1.01 | |
| 0.73 | | |||
| Hvcn1 | sAMY | Striatum-like amygdalar nuclei | 0.44 | |
| 0.25 | | |||
| Hvcn1 | STR | Striatum | 1.19 | |
| 0.82 | | |||
| Hvcn1 | STRd | Striatum dorsal region | 1.16 | |
| 0.85 | | |||
| Hvcn1 | STRv | Striatum ventral region | 1.51 | |
| 0.9 | | |||
| Hvcn1 | TH | Thalamus | 3.06 | |
| 2.25 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00003309 | 17 | 27 | 43 | HFTVVGDDYHAWNINYK | Peptide Atlas |