Annotation Detail for GFM2
Basic Information Top
| Gene Symbol: | GFM2 ( EF-G2mt,EFG2,MRRF2,MST027,RRF2,RRF2mt,hEFG2,mEF-G 2 ) |
|---|---|
| Gene Full Name: | G elongation factor, mitochondrial 2 |
| Band: | 5q13.3 |
| Quick Links | Entrez ID:84340; OMIM: 606544; Uniprot ID:RRF2M_HUMAN; ENSEMBL ID: ENSG00000164347; HGNC ID: 29682 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.277154
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 2 / 62319 | 32 |  |
| fetus | 39 / 564012 | 69 | |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 7 / 55556 | 125 | |
| adult | 68 / 1939121 | 35 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 4 / 17475 | 228 |  |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 5 / 82823 | 60 | |
| colorectal tumor | 4 / 114246 | 35 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 9 / 263845 | 34 | |
| glioma | 1 / 106883 | 9 |  |
| head and neck tumor | 8 / 136302 | 58 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 6 / 95842 | 62 | |
| liver tumor | 5 / 96359 | 51 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 159 / 3360307 | 47 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 15 / 125680 | 119 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 3 / 46356 | 64 | |
| skin tumor | 6 / 124949 | 48 | |
| soft tissue/muscle tissue tumor | 4 / 125191 | 31 | |
| uterine tumor | 9 / 90257 | 99 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 3 / 33197 | 90 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 4 / 29757 | 134 | |
| blood | 5 / 123478 | 40 | |
| bone | 4 / 71655 | 55 | |
| bone marrow | 3 / 48801 | 61 | |
| brain | 65 / 1100989 | 59 | |
| cervix | 4 / 48171 | 83 | |
| connective tissue | 4 / 149255 | 26 | |
| ear | 2 / 16212 | 123 | |
| embryonic tissue | 7 / 215722 | 32 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 7 / 211054 | 33 | |
| heart | 3 / 89626 | 33 | |
| intestine | 7 / 234472 | 29 | |
| kidney | 3 / 211777 | 14 | |
| larynx | 0 / 24145 | 0 | |
| liver | 11 / 207743 | 52 | |
| lung | 9 / 336974 | 26 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 5 / 91610 | 54 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 6 / 67052 | 89 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 4 / 102051 | 39 | |
| pancreas | 3 / 214812 | 13 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 2 / 16585 | 120 | |
| placenta | 8 / 280825 | 28 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 10 / 210574 | 47 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 5 / 96619 | 51 | |
| testis | 33 / 330442 | 99 | |
| thymus | 15 / 81131 | 184 | |
| thyroid | 3 / 47473 | 63 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 7 / 52413 | 133 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 12 / 232878 | 51 | |
| vascular | 3 / 51780 | 57 | |
Microarray in - Probe name: A_24_P137582
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.17 ± 0.39 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.19 ± 0.16 | |
| Basal Part of Pons | 5.18 ± 0.28 | |
| Cerebellar Cortex | 5.06 ± 0.35 | |
| Cerebellar Nuclei | 5.43 ± 0.63 | |
| Claustrum | 5.5 ± 0.62 | |
| Epithalamus | 5 ± 0.55 | |
| Frontal Lobe | 5.33 ± 0.39 | |
| Globus Pallidus | 5.03 ± 0.45 | |
| Hypothalamus | 5.02 ± 0.63 | |
| Insula | 5.28 ± 0.32 | |
| Limbic Lobe | 5.39 ± 0.37 | |
| Mesencephalon | 5.33 ± 0.46 | |
| Myelencephalon | 5.37 ± 0.44 | |
| Occipital Lobe | 5.31 ± 0.36 | |
| Parietal Lobe | 5.37 ± 0.43 | |
| Pontine Tegmentum | 5.23 ± 0.44 | |
| Striatum | 5.46 ± 0.39 | |
| Subthalamus | 5.16 ± 0.5 | |
| Temporal Lobe | 5.35 ± 0.36 | |
| Thalamus | 5.42 ± 0.33 | |
| White Matter | 4.8 ± 0.45 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Gfm2 | CB | Cerebellum | 100 | |
| 100 | | |||
| Gfm2 | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Gfm2 | HIP | Hippocampal region | 100 | |
| 100 | | |||
| Gfm2 | HPF | Hippocampal formation | 100 | |
| 100 | | |||
| Gfm2 | HY | Hypothalamus | 100 | |
| 100 | | |||
| Gfm2 | LSX | Lateral septal complex | 100 | |
| 100 | | |||
| Gfm2 | MB | Midbrain | 100 | |
| 100 | | |||
| Gfm2 | MY | Medulla | 100 | |
| 100 | | |||
| Gfm2 | OLF | Olfactory bulb | 100 | |
| 100 | | |||
| Gfm2 | P | Pons | 100 | |
| 100 | | |||
| Gfm2 | PAL | Pallidum | 100 | |
| 100 | | |||
| Gfm2 | RHP | Retrohippocampal region | 100 | |
| 100 | | |||
| Gfm2 | sAMY | Striatum-like amygdalar nuclei | 100 | |
| 100 | | |||
| Gfm2 | STR | Striatum | 100 | |
| 100 | | |||
| Gfm2 | STRd | Striatum dorsal region | 100 | |
| 100 | | |||
| Gfm2 | STRv | Striatum ventral region | 100 | |
| 100 | | |||
| Gfm2 | TH | Thalamus | 100 | |
| 100 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00071976 | 13 | 259 | 271 | KPLLEMNDPELLK | Peptide Atlas |