Annotation Detail for FAM120B
Basic Information Top
| Gene Symbol: | FAM120B ( CCPG,FLJ55614,KIAA0183,KIAA1838,PGCC1,dJ894D12.1 ) |
|---|---|
| Gene Full Name: | family with sequence similarity 120B |
| Band: | 6q27 |
| Quick Links | Entrez ID:84498; OMIM: 612266; Uniprot ID:F120B_HUMAN; ENSEMBL ID: ENSG00000112584; HGNC ID: 21109 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.369522
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 32 / 564012 | 56 |  |
| neonate | 1 / 31097 | 32 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 87 / 1939121 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 6 / 82823 | 72 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 4 / 17290 | 231 |  |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 7 / 263845 | 26 | |
| glioma | 5 / 106883 | 46 | |
| head and neck tumor | 14 / 136302 | 102 | |
| kidney tumor | 4 / 68959 | 58 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 3 / 96359 | 31 | |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 12 / 97250 | 123 | |
| normal | 174 / 3360307 | 51 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 1 / 104616 | 9 |  |
| primitive neuroectodermal tumor of the CNS | 3 / 125680 | 23 | |
| prostate cancer | 3 / 102680 | 29 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 5 / 124949 | 40 | |
| soft tissue/muscle tissue tumor | 5 / 125191 | 39 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 2 / 13106 | 152 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 85 / 1100989 | 77 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 17 / 149255 | 113 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 4 / 215722 | 18 | |
| esophagus | 4 / 20209 | 197 | |
| eye | 11 / 211054 | 52 | |
| heart | 4 / 89626 | 44 | |
| intestine | 10 / 234472 | 42 | |
| kidney | 13 / 211777 | 61 | |
| larynx | 1 / 24145 | 41 | |
| liver | 8 / 207743 | 38 | |
| lung | 23 / 336974 | 68 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 6 / 153271 | 39 | |
| mouth | 9 / 67052 | 134 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 3 / 102051 | 29 | |
| pancreas | 9 / 214812 | 41 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 13 / 280825 | 46 | |
| prostate | 10 / 189345 | 52 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 8 / 210574 | 37 | |
| spleen | 3 / 53952 | 55 | |
| stomach | 2 / 96619 | 20 | |
| testis | 24 / 330442 | 72 | |
| thymus | 6 / 81131 | 73 | |
| thyroid | 3 / 47473 | 63 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 6 / 52413 | 114 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 18 / 232878 | 77 | |
| vascular | 4 / 51780 | 77 | |
Microarray in - Probe name: CUST_8392_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.39 ± 0.54 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.58 ± 0.4 | |
| Basal Part of Pons | 4.65 ± 0.19 | |
| Cerebellar Cortex | 4.87 ± 0.29 | |
| Cerebellar Nuclei | 4.69 ± 0.37 | |
| Claustrum | 4.19 ± 0.64 | |
| Epithalamus | 4.88 ± 0.37 | |
| Frontal Lobe | 4.47 ± 0.42 | |
| Globus Pallidus | 4.24 ± 0.45 | |
| Hypothalamus | 4.39 ± 0.48 | |
| Insula | 4.32 ± 0.49 | |
| Limbic Lobe | 4.46 ± 0.41 | |
| Mesencephalon | 4.52 ± 0.47 | |
| Myelencephalon | 4.44 ± 0.49 | |
| Occipital Lobe | 4.7 ± 0.41 | |
| Parietal Lobe | 4.47 ± 0.43 | |
| Pontine Tegmentum | 4.48 ± 0.45 | |
| Striatum | 4.27 ± 0.41 | |
| Subthalamus | 4.18 ± 0.44 | |
| Temporal Lobe | 4.51 ± 0.42 | |
| Thalamus | 4.56 ± 0.44 | |
| White Matter | 5.2 ± 0.19 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 4932442K08Rik | CB | Cerebellum | 21.9 | |
| 27.2 | | |||
| 4932442K08Rik | CTX | Cerebral cortex | 31.35 | |
| 23.65 | | |||
| 4932442K08Rik | HIP | Hippocampal region | 27.43 | |
| 30.43 | | |||
| 4932442K08Rik | HPF | Hippocampal formation | 36.64 | |
| 34.9 | | |||
| 4932442K08Rik | HY | Hypothalamus | 23.02 | |
| 17.97 | | |||
| 4932442K08Rik | LSX | Lateral septal complex | 51.47 | |
| 38.6 | | |||
| 4932442K08Rik | MB | Midbrain | 27.6 | |
| 25.72 | | |||
| 4932442K08Rik | MY | Medulla | 36.76 | |
| 42.18 | | |||
| 4932442K08Rik | OLF | Olfactory bulb | 33.06 | |
| 25.14 | | |||
| 4932442K08Rik | P | Pons | 31.26 | |
| 35.22 | | |||
| 4932442K08Rik | PAL | Pallidum | 30.5 | |
| 27.15 | | |||
| 4932442K08Rik | RHP | Retrohippocampal region | 54.64 | |
| 43.28 | | |||
| 4932442K08Rik | sAMY | Striatum-like amygdalar nuclei | 35.16 | |
| 24.68 | | |||
| 4932442K08Rik | STR | Striatum | 34.15 | |
| 23.46 | | |||
| 4932442K08Rik | STRd | Striatum dorsal region | 32.27 | |
| 21.92 | | |||
| 4932442K08Rik | STRv | Striatum ventral region | 35.64 | |
| 23.72 | | |||
| 4932442K08Rik | TH | Thalamus | 24.49 | |
| 20.56 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00061762 | 7 | 253 | 259 | VKENFDK | Peptide Atlas |