Annotation Detail for JAGN1
Basic Information Top
| Gene Symbol: | JAGN1 ( FLJ14602,GL009 ) |
|---|---|
| Gene Full Name: | jagunal homolog 1 (Drosophila) |
| Band: | 3p25.3 |
| Quick Links | Entrez ID:84522; OMIM: NA; Uniprot ID:JAGN1_HUMAN; ENSEMBL ID: ENSG00000171135; HGNC ID: 26926 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.24054
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 25 / 564012 | 44 | |
| neonate | 0 / 31097 | 0 | |
| infant | 2 / 23620 | 84 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 97 / 1939121 | 50 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 2 / 12794 | 156 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 9 / 94178 | 95 | |
| cervical tumor | 10 / 34366 | 290 |  |
| chondrosarcoma | 6 / 82823 | 72 | |
| colorectal tumor | 9 / 114246 | 78 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 6 / 263845 | 22 | |
| glioma | 7 / 106883 | 65 | |
| head and neck tumor | 4 / 136302 | 29 | |
| kidney tumor | 5 / 68959 | 72 | |
| leukemia | 1 / 95842 | 10 |  |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 2 / 71755 | 27 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 116 / 3360307 | 34 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 8 / 104616 | 76 | |
| primitive neuroectodermal tumor of the CNS | 16 / 125680 | 127 | |
| prostate cancer | 4 / 102680 | 38 | |
| retinoblastoma | 3 / 46356 | 64 | |
| skin tumor | 6 / 124949 | 48 | |
| soft tissue/muscle tissue tumor | 7 / 125191 | 55 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 5 / 123478 | 40 | |
| bone | 5 / 71655 | 69 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 37 / 1100989 | 33 | |
| cervix | 14 / 48171 | 290 | |
| connective tissue | 7 / 149255 | 46 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 5 / 215722 | 23 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 12 / 211054 | 56 | |
| heart | 0 / 89626 | 0 | |
| intestine | 17 / 234472 | 72 | |
| kidney | 13 / 211777 | 61 | |
| larynx | 0 / 24145 | 0 | |
| liver | 5 / 207743 | 24 | |
| lung | 12 / 336974 | 35 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 9 / 153271 | 58 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 10 / 214812 | 46 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 15 / 280825 | 53 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 11 / 210574 | 52 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 3 / 96619 | 31 | |
| testis | 6 / 330442 | 18 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 3 / 47473 | 63 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 5 / 232878 | 21 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: CUST_5850_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.34 ± 0.53 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.16 ± 0.4 | |
| Basal Part of Pons | 5.46 ± 0.39 | |
| Cerebellar Cortex | 5.44 ± 0.39 | |
| Cerebellar Nuclei | 5.34 ± 0.44 | |
| Claustrum | 5.21 ± 0.36 | |
| Epithalamus | 5.12 ± 0.38 | |
| Frontal Lobe | 5.34 ± 0.41 | |
| Globus Pallidus | 5.34 ± 0.45 | |
| Hypothalamus | 5.36 ± 0.21 | |
| Insula | 5.2 ± 0.35 | |
| Limbic Lobe | 5.3 ± 0.46 | |
| Mesencephalon | 5.17 ± 0.41 | |
| Myelencephalon | 5.31 ± 0.45 | |
| Occipital Lobe | 5.08 ± 0.43 | |
| Parietal Lobe | 5.24 ± 0.36 | |
| Pontine Tegmentum | 5.18 ± 0.37 | |
| Striatum | 5.09 ± 0.36 | |
| Subthalamus | 5.36 ± 0.3 | |
| Temporal Lobe | 5.3 ± 0.44 | |
| Thalamus | 5.22 ± 0.36 | |
| White Matter | 5.78 ± 0.11 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Jagn1 | CB | Cerebellum | 18.59 | |
| 39.05 | | |||
| Jagn1 | CTX | Cerebral cortex | 43.2 | |
| 38.33 | | |||
| Jagn1 | HIP | Hippocampal region | 32.73 | |
| 44.65 | | |||
| Jagn1 | HPF | Hippocampal formation | 31.13 | |
| 37.06 | | |||
| Jagn1 | HY | Hypothalamus | 3.83 | |
| 4.04 | | |||
| Jagn1 | LSX | Lateral septal complex | 2.58 | |
| 2.2 | | |||
| Jagn1 | MB | Midbrain | 7.1 | |
| 9.66 | | |||
| Jagn1 | MY | Medulla | 12.82 | |
| 20.28 | | |||
| Jagn1 | OLF | Olfactory bulb | 27.83 | |
| 27.16 | | |||
| Jagn1 | P | Pons | 8.79 | |
| 14.72 | | |||
| Jagn1 | PAL | Pallidum | 8.29 | |
| 9.96 | | |||
| Jagn1 | RHP | Retrohippocampal region | 27.94 | |
| 25.09 | | |||
| Jagn1 | sAMY | Striatum-like amygdalar nuclei | 21.96 | |
| 20.32 | | |||
| Jagn1 | STR | Striatum | 13.96 | |
| 12.16 | | |||
| Jagn1 | STRd | Striatum dorsal region | 14.72 | |
| 12.64 | | |||
| Jagn1 | STRv | Striatum ventral region | 12.66 | |
| 10.74 | | |||
| Jagn1 | TH | Thalamus | 9.12 | |
| 9.94 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00386276 | 12 | 169 | 180 | LLDSWFTSTQEK | Peptide Atlas |