Annotation Detail for ACSS1
Basic Information Top
| Gene Symbol: | ACSS1 ( ACAS2L,AceCS2L,FLJ45659,MGC33843 ) |
|---|---|
| Gene Full Name: | acyl-CoA synthetase short-chain family member 1 |
| Band: | 20p11.21 |
| Quick Links | Entrez ID:84532; OMIM: NA; Uniprot ID:ACS2L_HUMAN; ENSEMBL ID: ENSG00000154930; HGNC ID: 16091 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.529353
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 15 / 564012 | 26 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 3 / 55556 | 53 |  |
| adult | 133 / 1939121 | 68 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 4 / 94178 | 42 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 20 / 114246 | 175 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 7 / 263845 | 26 | |
| glioma | 9 / 106883 | 84 | |
| head and neck tumor | 12 / 136302 | 88 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 6 / 95842 | 62 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 6 / 97250 | 61 | |
| normal | 237 / 3360307 | 70 | |
| ovarian tumor | 3 / 76682 | 39 | |
| pancreatic tumor | 1 / 104616 | 9 |  |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 7 / 124949 | 56 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 0 / 29757 | 0 | |
| blood | 8 / 123478 | 64 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 11 / 48801 | 225 |  |
| brain | 110 / 1100989 | 99 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 17 / 211054 | 80 | |
| heart | 5 / 89626 | 55 | |
| intestine | 25 / 234472 | 106 | |
| kidney | 8 / 211777 | 37 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 8 / 336974 | 23 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 7 / 91610 | 76 | |
| mammary gland | 5 / 153271 | 32 | |
| mouth | 12 / 67052 | 178 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 4 / 15768 | 253 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 5 / 41328 | 120 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 51 / 280825 | 181 | |
| prostate | 10 / 189345 | 52 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 11 / 210574 | 52 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 3 / 96619 | 31 | |
| testis | 41 / 330442 | 124 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 2 / 16999 | 117 | |
| trachea | 6 / 52413 | 114 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 7 / 232878 | 30 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_24_P185689
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.77 ± 0.35 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.76 ± 0.31 | |
| Basal Part of Pons | 4.58 ± 0.66 | |
| Cerebellar Cortex | 4.53 ± 0.42 | |
| Cerebellar Nuclei | 4.65 ± 0.62 | |
| Claustrum | 4.95 ± 0.68 | |
| Epithalamus | 4.65 ± 0.31 | |
| Frontal Lobe | 4.52 ± 0.54 | |
| Globus Pallidus | 5.7 ± 0.62 | |
| Hypothalamus | 4.26 ± 0.53 | |
| Insula | 4.35 ± 0.57 | |
| Limbic Lobe | 4.51 ± 0.64 | |
| Mesencephalon | 4.73 ± 0.65 | |
| Myelencephalon | 4.72 ± 0.6 | |
| Occipital Lobe | 5.08 ± 0.66 | |
| Parietal Lobe | 4.8 ± 0.54 | |
| Pontine Tegmentum | 4.87 ± 0.65 | |
| Striatum | 5.11 ± 0.62 | |
| Subthalamus | 4.6 ± 0.61 | |
| Temporal Lobe | 4.52 ± 0.57 | |
| Thalamus | 5.17 ± 0.51 | |
| White Matter | 5.19 ± 0.37 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Acss1 | CB | Cerebellum | 2.13 | |
| 3.25 | | |||
| Acss1 | CTX | Cerebral cortex | 3.22 | |
| 2.75 | | |||
| Acss1 | HIP | Hippocampal region | 7.33 | |
| 7.03 | | |||
| Acss1 | HPF | Hippocampal formation | 5.83 | |
| 5.16 | | |||
| Acss1 | HY | Hypothalamus | 1.71 | |
| 1.84 | | |||
| Acss1 | LSX | Lateral septal complex | 0.48 | |
| 0.3 | | |||
| Acss1 | MB | Midbrain | 1.48 | |
| 2.15 | | |||
| Acss1 | MY | Medulla | 1.01 | |
| 1.37 | | |||
| Acss1 | OLF | Olfactory bulb | 1.59 | |
| 1.2 | | |||
| Acss1 | P | Pons | 0.61 | |
| 0.87 | | |||
| Acss1 | PAL | Pallidum | 0.16 | |
| 0.14 | | |||
| Acss1 | RHP | Retrohippocampal region | 2.12 | |
| 1.64 | | |||
| Acss1 | sAMY | Striatum-like amygdalar nuclei | 0.93 | |
| 1.05 | | |||
| Acss1 | STR | Striatum | 0.87 | |
| 0.81 | | |||
| Acss1 | STRd | Striatum dorsal region | 0.94 | |
| 0.92 | | |||
| Acss1 | STRv | Striatum ventral region | 0.52 | |
| 0.4 | | |||
| Acss1 | TH | Thalamus | 2.34 | |
| 2.3 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00040675 | 13 | 241 | 253 | HCPTVQHVLVAHR | Peptide Atlas |