Annotation Detail for GNPTG
Basic Information Top
| Gene Symbol: | GNPTG ( C16orf27,GNPTAG,LP2537,RJD9 ) |
|---|---|
| Gene Full Name: | N-acetylglucosamine-1-phosphate transferase, gamma subunit |
| Band: | 16p13.3 |
| Quick Links | Entrez ID:84572; OMIM: 607838; Uniprot ID:GNPTG_HUMAN; ENSEMBL ID: ENSG00000090581; HGNC ID: 23026 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.241575
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 3 / 70761 | 42 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 21 / 564012 | 37 | |
| neonate | 1 / 31097 | 32 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 119 / 1939121 | 61 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 11 / 82823 | 132 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 6 / 119369 | 50 | |
| germ cell tumor | 2 / 263845 | 7 |  |
| glioma | 17 / 106883 | 159 | |
| head and neck tumor | 4 / 136302 | 29 | |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 8 / 97250 | 82 | |
| normal | 159 / 3360307 | 47 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 3 / 102680 | 29 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 19 / 124949 | 152 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 10 / 90257 | 110 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 0 / 29757 | 0 | |
| blood | 2 / 123478 | 16 | |
| bone | 6 / 71655 | 83 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 81 / 1100989 | 73 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 8 / 149255 | 53 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 5 / 215722 | 23 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 15 / 211054 | 71 | |
| heart | 2 / 89626 | 22 | |
| intestine | 13 / 234472 | 55 | |
| kidney | 13 / 211777 | 61 | |
| larynx | 1 / 24145 | 41 | |
| liver | 2 / 207743 | 9 | |
| lung | 22 / 336974 | 65 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 5 / 214812 | 23 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 5 / 16585 | 301 |  |
| placenta | 14 / 280825 | 49 | |
| prostate | 13 / 189345 | 68 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 23 / 210574 | 109 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 3 / 96619 | 31 | |
| testis | 6 / 330442 | 18 | |
| thymus | 4 / 81131 | 49 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 1 / 13680 | 73 | |
| uterus | 16 / 232878 | 68 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_10515_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 9.7 ± 0.21 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 9.82 ± 0.36 | |
| Basal Part of Pons | 9.92 ± 0.23 | |
| Cerebellar Cortex | 9.62 ± 0.14 | |
| Cerebellar Nuclei | 9.96 ± 0.18 | |
| Claustrum | 9.72 ± 0.26 | |
| Epithalamus | 9.65 ± 0.26 | |
| Frontal Lobe | 9.79 ± 0.24 | |
| Globus Pallidus | 10.33 ± 0.13 | |
| Hypothalamus | 9.6 ± 0.28 | |
| Insula | 9.71 ± 0.21 | |
| Limbic Lobe | 9.8 ± 0.21 | |
| Mesencephalon | 9.84 ± 0.25 | |
| Myelencephalon | 9.81 ± 0.24 | |
| Occipital Lobe | 9.87 ± 0.27 | |
| Parietal Lobe | 9.77 ± 0.25 | |
| Pontine Tegmentum | 9.7 ± 0.2 | |
| Striatum | 9.68 ± 0.25 | |
| Subthalamus | 9.83 ± 0.16 | |
| Temporal Lobe | 9.72 ± 0.2 | |
| Thalamus | 9.85 ± 0.19 | |
| White Matter | 10.54 ± 0.17 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Gnptg | CB | Cerebellum | 56.21 | |
| 63.78 | | |||
| Gnptg | CTX | Cerebral cortex | 100 | |
| 94.77 | | |||
| Gnptg | HIP | Hippocampal region | 77.06 | |
| 100 | | |||
| Gnptg | HPF | Hippocampal formation | 85.46 | |
| 100 | | |||
| Gnptg | HY | Hypothalamus | 65.62 | |
| 54.01 | | |||
| Gnptg | LSX | Lateral septal complex | 100 | |
| 100 | | |||
| Gnptg | MB | Midbrain | 61.41 | |
| 56.68 | | |||
| Gnptg | MY | Medulla | 52.54 | |
| 53.34 | | |||
| Gnptg | OLF | Olfactory bulb | 100 | |
| 92.78 | | |||
| Gnptg | P | Pons | 49.64 | |
| 49.68 | | |||
| Gnptg | PAL | Pallidum | 58.48 | |
| 53.99 | | |||
| Gnptg | RHP | Retrohippocampal region | 100 | |
| 90.69 | | |||
| Gnptg | sAMY | Striatum-like amygdalar nuclei | 100 | |
| 80.36 | | |||
| Gnptg | STR | Striatum | 100 | |
| 87.88 | | |||
| Gnptg | STRd | Striatum dorsal region | 100 | |
| 82.59 | | |||
| Gnptg | STRv | Striatum ventral region | 100 | |
| 99.56 | | |||
| Gnptg | TH | Thalamus | 62.31 | |
| 53.54 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00045910 | 17 | 81 | 97 | YEFCPFHNVTQHEQTFR | Peptide Atlas |