AutismKB 2.0

Annotation Detail for ZGPAT


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Basic Information Top
Gene Symbol:ZGPAT ( GPATC6,GPATCH6,KIAA1847,MGC44880,ZC3H9,ZC3HDC9,ZIP )
Gene Full Name: zinc finger, CCCH-type with G patch domain
Band: 20q13.33
Quick LinksEntrez ID:84619; OMIM: NA; Uniprot ID:ZGPAT_HUMAN; ENSEMBL ID: ENSG00000197114; HGNC ID: 15948
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst1 / 6231916
fetus13 / 56401223
neonate1 / 3109732
infant1 / 2362042
juvenile3 / 5555653
adult92 / 193912147
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor5 / 9417853
cervical tumor0 / 343660 
chondrosarcoma3 / 8282336
colorectal tumor5 / 11424643
esophageal tumor3 / 17290173
gastrointestinal tumor5 / 11936941
germ cell tumor12 / 26384545
glioma7 / 10688365
head and neck tumor3 / 13630222
kidney tumor0 / 689590 
leukemia3 / 9584231
liver tumor5 / 9635951
lung tumor10 / 10312796
lymphoma1 / 7175513
non-neoplasia5 / 9725051
normal209 / 336030762
ovarian tumor2 / 7668226
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS8 / 12568063
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor7 / 12494956
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites3 / 4001574
bladder5 / 29757168
blood16 / 123478129
bone5 / 7165569
bone marrow0 / 488010 
brain91 / 110098982
cervix1 / 4817120
connective tissue5 / 14925533
ear0 / 162120 
embryonic tissue4 / 21572218
esophagus4 / 20209197
eye7 / 21105433
heart9 / 89626100
intestine14 / 23447259
kidney13 / 21177761
larynx0 / 241450 
liver9 / 20774343
lung20 / 33697459
lymph1 / 4427022
lymph node1 / 9161010
mammary gland7 / 15327145
mouth1 / 6705214
muscle4 / 10771537
nerve0 / 157680 
ovary4 / 10205139
pancreas3 / 21481213
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta18 / 28082564
prostate6 / 18934531
salivary gland1 / 2015549
skin9 / 21057442
spleen15 / 53952278
stomach3 / 9661931
testis30 / 33044290
thymus22 / 81131271
thyroid2 / 4747342
tonsil0 / 169990 
trachea4 / 5241376
umbilical cord0 / 136800 
uterus9 / 23287838
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 57539_at
Cell line Expression level Expression bar
721_B_lymphoblasts29.4
Adipocyte14.6
AdrenalCortex19.15
Adrenalgland19.9
Amygdala14.75
Appendix13.9
AtrioventricularNode11.25
BDCA4+_DentriticCells77.4
Bonemarrow19.1
BronchialEpithelialCells15.3
CD105+_Endothelial17.05
CD14+_Monocytes56.55
CD19+_BCells(neg._sel.)55.5
CD33+_Myeloid24.7
CD34+23.9
CD4+_Tcells110.3
CD56+_NKCells55.8
CD71+_EarlyErythroid16.35
CD8+_Tcells87.05
CardiacMyocytes19.5
Caudatenucleus12.8
Cerebellum13.4
CerebellumPeduncles17.85
CiliaryGanglion11.65
CingulateCortex16.35
Colorectaladenocarcinoma59.5
DorsalRootGanglion10.9
FetalThyroid21.15
Fetalbrain16
Fetalliver13.15
Fetallung13.4
GlobusPallidus14.45
Heart39.7
Hypothalamus15.7
Kidney70.75
Leukemia_chronicMyelogenousK-56216.45
Leukemia_promyelocytic-HL-6017.6
Leukemialymphoblastic(MOLT-4)46.85
Liver1291.85
Lung41.6
Lymphnode22.1
Lymphoma_burkitts(Daudi)28.55
Lymphoma_burkitts(Raji)47.4
MedullaOblongata13.5
OccipitalLobe13.5
OlfactoryBulb10.7
Ovary9.3
Pancreas16.1
PancreaticIslet29
ParietalLobe19.95
Pituitary20.65
Placenta15.05
Pons14.2
PrefrontalCortex17.5
Prostate31
Salivarygland13.35
SkeletalMuscle50.45
Skin13.7
SmoothMuscle17.85
Spinalcord14.65
SubthalamicNucleus16.8
SuperiorCervicalGanglion16.55
TemporalLobe13.6
Testis33.7
TestisGermCell13.85
TestisIntersitial24.55
TestisLeydigCell15.75
TestisSeminiferousTubule14.15
Thalamus16.95
Thymus29.1
Thyroid24.2
Tongue18.4
Tonsil18.35
Trachea13.2
TrigeminalGanglion14.25
Uterus22.05
UterusCorpus22.2
WholeBlood33.45
Wholebrain16.15
colon15.2
pineal_day16.32
pineal_night16.44
retina17.625
small_intestine14.35
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P218654
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.74 ± 0.38
Basal Forebrain8.71 ± 0.12
Basal Part of Pons9 ± 0.13
Cerebellar Cortex8.84 ± 0.23
Cerebellar Nuclei8.8 ± 0.33
Claustrum8.78 ± 0.34
Epithalamus8.91 ± 0.31
Frontal Lobe8.91 ± 0.24
Globus Pallidus8.3 ± 0.27
Hypothalamus8.89 ± 0.19
Insula8.9 ± 0.17
Limbic Lobe8.82 ± 0.29
Mesencephalon8.76 ± 0.25
Myelencephalon8.84 ± 0.31
Occipital Lobe8.73 ± 0.3
Parietal Lobe8.9 ± 0.24
Pontine Tegmentum8.79 ± 0.25
Striatum8.86 ± 0.27
Subthalamus9.03 ± 0.12
Temporal Lobe8.97 ± 0.24
Thalamus8.74 ± 0.22
White Matter8.33 ± 0.25
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
ZgpatCBCerebellum23.87
48.68
ZgpatCTXCerebral cortex100
100
ZgpatHIPHippocampal region94.17
100
ZgpatHPFHippocampal formation81.4
100
ZgpatHYHypothalamus48.19
41.84
ZgpatLSXLateral septal complex96.72
66
ZgpatMBMidbrain46.32
52.67
ZgpatMYMedulla22.22
34.94
ZgpatOLFOlfactory bulb100
100
ZgpatPPons29.05
37.89
ZgpatPALPallidum79.17
71.73
ZgpatRHPRetrohippocampal region57.88
54.53
ZgpatsAMYStriatum-like amygdalar nuclei100
100
ZgpatSTRStriatum100
74.97
ZgpatSTRdStriatum dorsal region90.37
64.87
ZgpatSTRvStriatum ventral region100
93.09
ZgpatTHThalamus80.04
76.78
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00516004 27 107 133 AEAGPESAAGGQEEEEGEDEEELSGTK Peptide Atlas
ZGPAT_HUMAN_1 14 1 14 MDEESLESALQTYR PRIDE
ZGPAT_HUMAN_507 14 507 520 QLRAQEAGLQQEQR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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