AutismKB 2.0

Annotation Detail for SUPT3H


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Basic Information Top
Gene Symbol:SUPT3H ( SPT3,SPT3L )
Gene Full Name: suppressor of Ty 3 homolog (S. cerevisiae)
Band: 6p21.1
Quick LinksEntrez ID:8464; OMIM: 602947; Uniprot ID:SUPT3_HUMAN; ENSEMBL ID: ENSG00000196284; HGNC ID: 11466
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body4 / 7076156
blastocyst0 / 623190 
fetus17 / 56401230
neonate0 / 310970 
infant1 / 2362042
juvenile1 / 5555617
adult21 / 193912110
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor4 / 26384515
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor1 / 6895914
leukemia0 / 958420 
liver tumor2 / 9635920
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal46 / 336030713
ovarian tumor2 / 7668226
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer0 / 1026800 
retinoblastoma4 / 4635686
skin tumor1 / 1249498
soft tissue/muscle tissue tumor7 / 12519155
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland3 / 3319790
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone1 / 7165513
bone marrow0 / 488010 
brain17 / 110098915
cervix0 / 481710 
connective tissue6 / 14925540
ear0 / 162120 
embryonic tissue6 / 21572227
esophagus0 / 202090 
eye5 / 21105423
heart1 / 8962611
intestine1 / 2344724
kidney3 / 21177714
larynx0 / 241450 
liver3 / 20774314
lung5 / 33697414
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle3 / 10771527
nerve0 / 157680 
ovary2 / 10205119
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin1 / 2105744
spleen0 / 539520 
stomach0 / 966190 
testis8 / 33044224
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus2 / 2328788
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 211106_at
Cell line Expression level Expression bar
721_B_lymphoblasts8.1
Adipocyte7.9
AdrenalCortex8.35
Adrenalgland6.7
Amygdala8.4
Appendix10.4
AtrioventricularNode6.05
BDCA4+_DentriticCells5.85
Bonemarrow8
BronchialEpithelialCells7.95
CD105+_Endothelial6.7
CD14+_Monocytes7.7
CD19+_BCells(neg._sel.)7.85
CD33+_Myeloid9.55
CD34+6.75
CD4+_Tcells8.9
CD56+_NKCells9.55
CD71+_EarlyErythroid7.15
CD8+_Tcells8.95
CardiacMyocytes10.3
Caudatenucleus7.25
Cerebellum6.45
CerebellumPeduncles9.05
CiliaryGanglion5.85
CingulateCortex8.15
Colorectaladenocarcinoma8
DorsalRootGanglion6.1
FetalThyroid7.8
Fetalbrain7.9
Fetalliver7.55
Fetallung6
GlobusPallidus6.85
Heart11.15
Hypothalamus9.8
Kidney9.05
Leukemia_chronicMyelogenousK-5627.15
Leukemia_promyelocytic-HL-607.05
Leukemialymphoblastic(MOLT-4)6.05
Liver10.65
Lung8.75
Lymphnode7
Lymphoma_burkitts(Daudi)10.15
Lymphoma_burkitts(Raji)11.15
MedullaOblongata13.55
OccipitalLobe7.65
OlfactoryBulb5.6
Ovary5.3
Pancreas6.4
PancreaticIslet8.5
ParietalLobe9
Pituitary9.35
Placenta8.25
Pons7.6
PrefrontalCortex9.4
Prostate8.8
Salivarygland6.35
SkeletalMuscle10
Skin6.1
SmoothMuscle8.65
Spinalcord8.55
SubthalamicNucleus7.3
SuperiorCervicalGanglion9.9
TemporalLobe7.3
Testis11.9
TestisGermCell6.7
TestisIntersitial6.7
TestisLeydigCell8.55
TestisSeminiferousTubule8.4
Thalamus8.1
Thymus5.75
Thyroid9.95
Tongue7.8
Tonsil7.7
Trachea6.7
TrigeminalGanglion7.9
Uterus6.5
UterusCorpus8.9
WholeBlood8.8
Wholebrain6.5
colon8
pineal_day10
pineal_night9.2
retina8.375
small_intestine7.8
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_12795_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.69 ± 0.36
Basal Forebrain7.82 ± 0.21
Basal Part of Pons7.27 ± 0.21
Cerebellar Cortex7.49 ± 0.34
Cerebellar Nuclei7.05 ± 0.22
Claustrum7.79 ± 0.19
Epithalamus7.12 ± 0.45
Frontal Lobe7.57 ± 0.36
Globus Pallidus7.72 ± 0.44
Hypothalamus7.66 ± 0.42
Insula7.63 ± 0.39
Limbic Lobe7.63 ± 0.33
Mesencephalon7.63 ± 0.29
Myelencephalon7.55 ± 0.34
Occipital Lobe7.38 ± 0.25
Parietal Lobe7.64 ± 0.35
Pontine Tegmentum7.63 ± 0.35
Striatum7.54 ± 0.35
Subthalamus7.75 ± 0.15
Temporal Lobe7.56 ± 0.32
Thalamus7.71 ± 0.32
White Matter8.05 ± 0.38
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Supt3hCBCerebellum6.3
6.18
Supt3hCTXCerebral cortex14.19
10.12
Supt3hHIPHippocampal region12.07
11.16
Supt3hHPFHippocampal formation10.52
8.88
Supt3hHYHypothalamus3.78
2.99
Supt3hLSXLateral septal complex2.05
1.88
Supt3hMBMidbrain6.75
7.04
Supt3hMYMedulla16.6
18.99
Supt3hOLFOlfactory bulb12.4
9.82
Supt3hPPons8.55
9.91
Supt3hPALPallidum6.79
6.33
Supt3hRHPRetrohippocampal region8.2
5.94
Supt3hsAMYStriatum-like amygdalar nuclei3.11
2.18
Supt3hSTRStriatum2.79
2.1
Supt3hSTRdStriatum dorsal region1.96
1.45
Supt3hSTRvStriatum ventral region5.83
4.12
Supt3hTHThalamus4.15
3.28
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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