AutismKB 2.0

Annotation Detail for GLYR1


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Basic Information Top
Gene Symbol:GLYR1 ( BM045,HIBDL,N-PAC,NP60 )
Gene Full Name: glyoxylate reductase 1 homolog (Arabidopsis)
Band: 16p13.3
Quick LinksEntrez ID:84656; OMIM: 610660; Uniprot ID:GLYR1_HUMAN; ENSEMBL ID: ENSG00000140632; HGNC ID: 24434
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body6 / 7076184
blastocyst10 / 62319160
fetus59 / 564012104
neonate0 / 310970 
infant1 / 2362042
juvenile3 / 5555653
adult110 / 193912156
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor8 / 9417884
cervical tumor2 / 3436658
chondrosarcoma2 / 8282324
colorectal tumor7 / 11424661
esophageal tumor1 / 1729057
gastrointestinal tumor3 / 11936925
germ cell tumor14 / 26384553
glioma12 / 106883112
head and neck tumor9 / 13630266
kidney tumor1 / 6895914
leukemia10 / 95842104
liver tumor2 / 9635920
lung tumor8 / 10312777
lymphoma4 / 7175555
non-neoplasia3 / 9725030
normal228 / 336030767
ovarian tumor5 / 7668265
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer5 / 10268048
retinoblastoma2 / 4635643
skin tumor3 / 12494924
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor9 / 9025799
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland0 / 331970 
ascites1 / 4001524
bladder0 / 297570 
blood5 / 12347840
bone3 / 7165541
bone marrow6 / 48801122
brain76 / 110098969
cervix2 / 4817141
connective tissue5 / 14925533
ear2 / 16212123
embryonic tissue21 / 21572297
esophagus1 / 2020949
eye21 / 21105499
heart14 / 89626156
intestine17 / 23447272
kidney10 / 21177747
larynx1 / 2414541
liver12 / 20774357
lung27 / 33697480
lymph4 / 4427090
lymph node15 / 91610163
mammary gland11 / 15327171
mouth6 / 6705289
muscle8 / 10771574
nerve2 / 15768126
ovary7 / 10205168
pancreas6 / 21481227
parathyroid1 / 2053948
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta11 / 28082539
prostate7 / 18934536
salivary gland1 / 2015549
skin7 / 21057433
spleen5 / 5395292
stomach3 / 9661931
testis24 / 33044272
thymus4 / 8113149
thyroid2 / 4747342
tonsil1 / 1699958
trachea0 / 524130 
umbilical cord0 / 136800 
uterus14 / 23287860
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 222115_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts16.9
Adipocyte3.4
AdrenalCortex4.85
Adrenalgland3.25
Amygdala3.65
Appendix3.45
AtrioventricularNode2.65
BDCA4+_DentriticCells5.45
Bonemarrow3.3
BronchialEpithelialCells3.35
CD105+_Endothelial3.5
CD14+_Monocytes3.65
CD19+_BCells(neg._sel.)4.3
CD33+_Myeloid4.45
CD34+4.35
CD4+_Tcells3.85
CD56+_NKCells6
CD71+_EarlyErythroid3.25
CD8+_Tcells10.65
CardiacMyocytes4.35
Caudatenucleus3.05
Cerebellum3.2
CerebellumPeduncles3.85
CiliaryGanglion2.4
CingulateCortex3.5
Colorectaladenocarcinoma3.4
DorsalRootGanglion2.55
FetalThyroid3.3
Fetalbrain3.4
Fetalliver2.95
Fetallung2.85
GlobusPallidus2.5
Heart4.2
Hypothalamus3.7
Kidney2.8
Leukemia_chronicMyelogenousK-5623.2
Leukemia_promyelocytic-HL-603
Leukemialymphoblastic(MOLT-4)2.9
Liver4.4
Lung3.8
Lymphnode2.95
Lymphoma_burkitts(Daudi)5.2
Lymphoma_burkitts(Raji)4.8
MedullaOblongata3.15
OccipitalLobe3.1
OlfactoryBulb2.7
Ovary2.25
Pancreas2.7
PancreaticIslet3.6
ParietalLobe3.55
Pituitary4
Placenta3.6
Pons3.2
PrefrontalCortex4.25
Prostate4
Salivarygland2.7
SkeletalMuscle3.9
Skin2.65
SmoothMuscle4.6
Spinalcord3.65
SubthalamicNucleus3.05
SuperiorCervicalGanglion3.95
TemporalLobe3.1
Testis3
TestisGermCell3.25
TestisIntersitial2.85
TestisLeydigCell3.35
TestisSeminiferousTubule2.95
Thalamus3.45
Thymus2.8
Thyroid4.3
Tongue3.3
Tonsil3.45
Trachea2.85
TrigeminalGanglion3.4
Uterus2.8
UterusCorpus3.05
WholeBlood3.8
Wholebrain2.95
colon3.4
pineal_day5.32
pineal_night4.44
retina4.15
small_intestine3.3
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P218302
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.85 ± 0.32
Basal Forebrain6.66 ± 0.21
Basal Part of Pons6.87 ± 0.32
Cerebellar Cortex6.55 ± 0.29
Cerebellar Nuclei6.56 ± 0.27
Claustrum6.96 ± 0.37
Epithalamus6.92 ± 0.39
Frontal Lobe6.62 ± 0.36
Globus Pallidus6.7 ± 0.34
Hypothalamus6.69 ± 0.33
Insula6.67 ± 0.31
Limbic Lobe6.93 ± 0.33
Mesencephalon6.72 ± 0.43
Myelencephalon6.72 ± 0.35
Occipital Lobe6.85 ± 0.25
Parietal Lobe6.76 ± 0.32
Pontine Tegmentum6.67 ± 0.29
Striatum6.65 ± 0.32
Subthalamus6.71 ± 0.19
Temporal Lobe6.78 ± 0.31
Thalamus6.64 ± 0.3
White Matter6.87 ± 0.48
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00007562 14 299 312 TAEKCDLFIQEGAR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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