AutismKB 2.0

Annotation Detail for EMR3


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Basic Information Top
Gene Symbol:EMR3 ( - )
Gene Full Name: egf-like module containing, mucin-like, hormone receptor-like 3
Band: 19p13.1
Quick LinksEntrez ID:84658; OMIM: 606101; Uniprot ID:EMR3_HUMAN; ENSEMBL ID: ENSG00000131355; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus3 / 5640125
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult3 / 19391211
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia2 / 9584220
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal22 / 33603076
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood17 / 123478137
bone0 / 716550 
bone marrow0 / 488010 
brain0 / 11009890 
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine0 / 2344720 
kidney0 / 2117770 
larynx0 / 241450 
liver0 / 2077430 
lung1 / 3369742
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas1 / 2148124
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen3 / 5395255
stomach0 / 966190 
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 210724_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.55
Adipocyte5.1
AdrenalCortex5.7
Adrenalgland4.45
Amygdala5.5
Appendix5.5
AtrioventricularNode4.7
BDCA4+_DentriticCells5.85
Bonemarrow5.35
BronchialEpithelialCells5.2
CD105+_Endothelial5.35
CD14+_Monocytes19.6
CD19+_BCells(neg._sel.)5.6
CD33+_Myeloid6.9
CD34+6.6
CD4+_Tcells5.8
CD56+_NKCells7.75
CD71+_EarlyErythroid4.9
CD8+_Tcells5.05
CardiacMyocytes7.65
Caudatenucleus4.7
Cerebellum4.2
CerebellumPeduncles5.95
CiliaryGanglion3.85
CingulateCortex5.4
Colorectaladenocarcinoma5.25
DorsalRootGanglion4.15
FetalThyroid5.1
Fetalbrain5.3
Fetalliver4.5
Fetallung4.25
GlobusPallidus3.95
Heart6.9
Hypothalamus5.65
Kidney4.25
Leukemia_chronicMyelogenousK-5624.7
Leukemia_promyelocytic-HL-604.65
Leukemialymphoblastic(MOLT-4)4.2
Liver7.05
Lung5.85
Lymphnode4.6
Lymphoma_burkitts(Daudi)6.75
Lymphoma_burkitts(Raji)7.45
MedullaOblongata4.75
OccipitalLobe4.7
OlfactoryBulb4.15
Ovary3.85
Pancreas4.25
PancreaticIslet5.6
ParietalLobe5.6
Pituitary6.15
Placenta5.4
Pons5.15
PrefrontalCortex6.5
Prostate6.05
Salivarygland4.2
SkeletalMuscle6.35
Skin5.15
SmoothMuscle6
Spinalcord5.5
SubthalamicNucleus4.85
SuperiorCervicalGanglion6.15
TemporalLobe4.8
Testis4.4
TestisGermCell4.4
TestisIntersitial4.45
TestisLeydigCell5.25
TestisSeminiferousTubule4.5
Thalamus5.35
Thymus4.15
Thyroid6.55
Tongue5.3
Tonsil5.15
Trachea4.35
TrigeminalGanglion8.05
Uterus4.3
UterusCorpus6.8
WholeBlood103.25
Wholebrain4.35
colon5.25
pineal_day6.48
pineal_night6.36
retina6.35
small_intestine5.05
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_1926_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.2 ± 1.03
Basal Forebrain1.9 ± 0.31
Basal Part of Pons1.42 ± 0.4
Cerebellar Cortex1.68 ± 0.64
Cerebellar Nuclei2.24 ± 0.67
Claustrum2.59 ± 0.82
Epithalamus1.46 ± 0.64
Frontal Lobe1.66 ± 0.67
Globus Pallidus2.2 ± 0.3
Hypothalamus1.73 ± 0.66
Insula1.61 ± 0.44
Limbic Lobe1.86 ± 0.64
Mesencephalon1.9 ± 0.67
Myelencephalon1.81 ± 0.64
Occipital Lobe1.9 ± 0.63
Parietal Lobe1.79 ± 0.55
Pontine Tegmentum1.87 ± 0.62
Striatum1.91 ± 0.6
Subthalamus1.9 ± 0.6
Temporal Lobe1.66 ± 0.59
Thalamus1.74 ± 0.59
White Matter2.16 ± 0.17
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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