Annotation Detail for GLIS2
Basic Information Top
| Gene Symbol: | GLIS2 ( FLJ38247,NKL,NPHP7 ) |
|---|---|
| Gene Full Name: | GLIS family zinc finger 2 |
| Band: | 16p13.3 |
| Quick Links | Entrez ID:84662; OMIM: 608539; Uniprot ID:GLIS2_HUMAN; ENSEMBL ID: ENSG00000126603; HGNC ID: 29450 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.592087
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 3 / 70761 | 42 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 7 / 564012 | 12 | |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 36 / 1939121 | 18 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 1 / 17290 | 57 |  |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 9 / 263845 | 34 | |
| glioma | 10 / 106883 | 93 | |
| head and neck tumor | 1 / 136302 | 7 |  |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 73 / 3360307 | 21 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 6 / 104616 | 57 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 3 / 46356 | 64 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 4 / 125191 | 31 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 22 / 1100989 | 19 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 4 / 215722 | 18 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 8 / 211054 | 37 | |
| heart | 0 / 89626 | 0 | |
| intestine | 6 / 234472 | 25 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 10 / 336974 | 29 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 4 / 102051 | 39 | |
| pancreas | 16 / 214812 | 74 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 6 / 280825 | 21 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 5 / 330442 | 15 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 8 / 232878 | 34 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: CUST_1679_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.94 ± 0.95 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.66 ± 0.61 | |
| Basal Part of Pons | 3.77 ± 0.38 | |
| Cerebellar Cortex | 4.09 ± 0.58 | |
| Cerebellar Nuclei | 4.18 ± 0.75 | |
| Claustrum | 4.48 ± 0.81 | |
| Epithalamus | 3.3 ± 0.66 | |
| Frontal Lobe | 3.7 ± 0.73 | |
| Globus Pallidus | 3.91 ± 1.24 | |
| Hypothalamus | 3.48 ± 0.68 | |
| Insula | 3.36 ± 0.69 | |
| Limbic Lobe | 3.8 ± 0.67 | |
| Mesencephalon | 3.83 ± 0.81 | |
| Myelencephalon | 3.86 ± 0.73 | |
| Occipital Lobe | 4.14 ± 0.78 | |
| Parietal Lobe | 3.9 ± 0.6 | |
| Pontine Tegmentum | 3.92 ± 0.72 | |
| Striatum | 3.69 ± 0.62 | |
| Subthalamus | 3.56 ± 0.27 | |
| Temporal Lobe | 3.63 ± 0.71 | |
| Thalamus | 3.91 ± 0.54 | |
| White Matter | 3.45 ± 0.84 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Glis2 | CB | Cerebellum | 9.4 | |
| 8.3 | | |||
| Glis2 | CTX | Cerebral cortex | 49.4 | |
| 18.74 | | |||
| Glis2 | HIP | Hippocampal region | 18.45 | |
| 11.2 | | |||
| Glis2 | HPF | Hippocampal formation | 26.11 | |
| 13.6 | | |||
| Glis2 | HY | Hypothalamus | 36 | |
| 15.98 | | |||
| Glis2 | LSX | Lateral septal complex | 4.92 | |
| 1.49 | | |||
| Glis2 | MB | Midbrain | 39.34 | |
| 19.21 | | |||
| Glis2 | MY | Medulla | 51.59 | |
| 33.36 | | |||
| Glis2 | OLF | Olfactory bulb | 54.77 | |
| 28.71 | | |||
| Glis2 | P | Pons | 41.96 | |
| 27.17 | | |||
| Glis2 | PAL | Pallidum | 27.92 | |
| 12.69 | | |||
| Glis2 | RHP | Retrohippocampal region | 45.51 | |
| 19.39 | | |||
| Glis2 | sAMY | Striatum-like amygdalar nuclei | 23.19 | |
| 9.23 | | |||
| Glis2 | STR | Striatum | 14.55 | |
| 6.5 | | |||
| Glis2 | STRd | Striatum dorsal region | 13.27 | |
| 6.09 | | |||
| Glis2 | STRv | Striatum ventral region | 16.37 | |
| 7.38 | | |||
| Glis2 | TH | Thalamus | 16.06 | |
| 6.92 | |